can the input be the reads of metagenomes

patrickwest / EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

MIT License

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Open FengqingWang0712 opened 3 years ago

FengqingWang0712 commented 3 years ago

Dear all, I wonder can the input of EukRep be the paired reads of metagenomes. Thanks

patrickwest commented 2 years ago

Hi FengqingWang0712,

Prediction quality drops pretty precipitously on sequence lengths <1000bp. You could try it but I would take the results with a large grain of salt.