Closed Ahmed-Shibl closed 2 years ago
I had the same issue. Downgrading scikit-learn seems to work
pip install scikit-learn==0.19.2
I also had the ModuleNotFoundError issue and it occurred an error when I downgraded the scikit-learn. Now I installed Eukrep in a conda environment and it worked. conda install Eukrep
I suggest the use of a conda environment like so:
conda create -y -n eukrep-env -c bioconda scikit-learn==0.19.2 eukrep
Hi EukRep developers, Thanks for this useful tool! I've been trying to use EukRep on a metagenomic assembly but I keep running into an error.
Here's the command I used:
EukRep -i ~/miniconda3/envs/spades/M6-coral_assembly/scaffolds.fasta -o ~/miniconda3/envs/eukrep/M6-coral/Eukrep_output_spades_M6.fa --prokarya ~/miniconda3/envs/eukrep/M6-coral/Prok_output_spades_M6.fa
And this is the error I keep getting:
Running
pip install scikit-learn
gives me this:Any ideas on how to get around this, @patrickwest?
Thanks in advance