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patrickwest / EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
MIT License
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What methods/parameters would you recommend for running this on potentially eukaryotic MAGs? #16

Open jolespin opened 2 years ago

jolespin commented 2 years ago

I noticed that EukHeist classifies MAGs as 90% EukRep hits as eukaryotic.

If you're going with this approach, a few questions:

  1. What parameters would you use?
  2. Would you weight the contigs based on size?
  3. Would you split up the contigs into windows?