search

patrickwest / EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
MIT License
66 stars 12 forks source link

Numpy errors #4

Open susheelbhanu opened 4 years ago

susheelbhanu commented 4 years ago

Hey Patrick,

I was trying out your tool tonight, and ran into the following issues after using the below command: EukRep -i ../B4_filtered_megahit/final.contigs.fa -o B4_eukaryotic_contigs.fa


Traceback (most recent call last):
  File "/home/users/sbusi/.local/bin/EukRep", line 12, in <module>
    import EukRep.EukRep as EukRep
  File "/home/users/sbusi/.local/lib/python3.6/site-packages/EukRep/EukRep.py", line 12, in <module>
    from kpal.klib import Profile
  File "/home/users/sbusi/.local/lib/python3.6/site-packages/kpal/__init__.py", line 25, in <module>
    import h5py
  File "/home/users/sbusi/.local/lib/python3.6/site-packages/h5py/__init__.py", line 36, in <module>
    from ._conv import register_converters as _register_converters
  File "h5py/h5t.pxd", line 14, in init h5py._conv
  File "h5py/numpy.pxd", line 66, in init h5py.h5t
AttributeError: module 'numpy' has no attribute 'dtype'```

Any ideas on how to resolve this? I checked, and the numpy module exists in my environment. 

Thanks,
Susheel