installation error

[pramodkp]

Hii , I tried to install the package in rstudio but installation failed. Can you help me figure out the problem. below is the error.

library(devtools) Loading required package: usethis install_github("pauca/rrdkit/rrdkit") Downloading GitHub repo pauca/rrdkit@master ✔ checking for file ‘/tmp/RtmprNXBa5/remotes2c977d55c7c2/pauca-RRDKit-8954221/rrdkit/DESCRIPTION’ ... ─ preparing ‘rrdkit’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘rrdkit_0.13.tar.gz’

Installing package into ‘/home/cadd/R/x86_64-redhat-linux-gnu-library/3.6’ (as ‘lib’ is unspecified)

• installing source package ‘rrdkit’ ... using staged installation libs g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/Code -I/usr/lib64 -I"/home/cadd/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/Code -I/usr/lib64 -I"/home/cadd/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c inchi.cpp -o inchi.o inchi.cpp:57:36: fatal error: GraphMol/PeriodicTable.h: No such file or directory

  include <GraphMol/PeriodicTable.h>

                              ^

  compilation terminated. make: *** [inchi.o] Error 1 ERROR: compilation failed for package ‘rrdkit’

• removing ‘/home/cadd/R/x86_64-redhat-linux-gnu-library/3.6/rrdkit’ Error: Failed to install 'rrdkit' from GitHub: (converted from warning) installation of package ‘/tmp/RtmprNXBa5/file2c975505d1af/rrdkit_0.13.tar.gz’ had non-zero exit status

[gbaquer]

I have the exact same issue

[nghiencuuthuoc]

inchi.cpp:57:10: fatal error: GraphMol/PeriodicTable.h: No such file or directory 57 | #include <GraphMol/PeriodicTable.h> | ^~~~~~ compilation terminated. make: *** [/usr/lib/R/etc/Makeconf:181: inchi.o] Error 1 ERROR: compilation failed for package ‘rrdkit’

[lawremi]

It's expecting to find the headers in ${RDBASE}/Code, which does not appear to be set, since the compiler line has -I/Code. Once that is set, it should look in the right directory, but note that least when I installed RDKit via homebrew, I had to manually create the symlink from ${RDBASE}/Code into the Cellar directory containing the headers.