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paul-shannon / RCyjs

A Bioconductor package to display and manipulate graphs in cytoscape.js from R
MIT License
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BrowserViz error when attempting to run basic example #3

Closed kyleweise closed 6 years ago

kyleweise commented 6 years ago

Hello! I am very much interested in using this package to incorporate cytospace.js network visualizations into a Shiny app. I am trying to run the first example given in the vignette and I am running into an error. I try:

source("https://bioconductor.org/biocLite.R")
biocLite("RCyjs")
library(RCyjs)

g <- simpleDemoGraph()
noaNames(g)
edaNames(g)
noa(g, "type")
noa(g, "lfc")
eda(g, "edgeType")
eda(g, "score")
g <- simpleDemoGraph()
rcy <- RCyjs(portRange=9047:9067, quiet=TRUE, graph=g);
title <- "simple graph"
setBrowserWindowTitle(rcy, title))

and I get an error on the RCyjs(...) line that reads: Error in file.exists(browserFile) : argument "browserFile" is missing, with no default

Would appreciate any help you can provide on this. Have not been able to find and solutions so far.

Thanks!

-Kyle

paul-shannon commented 6 years ago

Thanks for the bug report, @kyleweise This is fixed as of Saturday. travis/ci testing coming soon, so that I will catch these errors early.