Download Issue

[abadgerw]

Hope all is well! I am running into some issues with downloading fsleyes.

I first downloaded anaconda and then attempted to download fsleyes into the base environment with the following command:

conda install -c conda-forge fsleyes

I received the following warnings and the conflicts process took near 24hrs:

Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): - WARNING conda.models.version:get_matcher(537): Using . with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 2., but conda is ignoring the . and treating it as 2 | WARNING conda.models.version:get_matcher(537): Using . with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1., but conda is ignoring the . and treating it as 1

• WARNING conda.models.version:get_matcher(537): Using . with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 3.6., but conda is ignoring the .* and treating it as 3.6 done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: - Found conflicts! Looking for incompatible packages.

At the end of the process I received the following note and it looked like fsleyes did not ultimately install:

Note that strict channel priority may have removed packages required for satisfiability.

I tried again after changing the channel priority to flexible and the conflicts persisted and fsleyes ultimately did not install.

I therefore created a new environment with the following commands and tried again:

conda create --name myenv

conda activate myenv

Fsleyes installed but crashes immediately every time I open it saying python quit unexpectedly with the following report:

Process: python [56588] Path: /Users/USER/*/python.app/Contents/MacOS/python Identifier: com.continuum.python Version: 0 Code Type: X86-64 (Native) Parent Process: ??? [56586] Responsible: python [56588] User ID: 918729325

Date/Time: 2021-11-15 06:06:59.218 +0000 OS Version: Mac OS X 10.14.6 (18G9323) Report Version: 12 Bridge OS Version: 3.0 (14Y906) Anonymous UUID: 80EEA3AF-B322-5B48-A3DD-B80E7C50BF9F

Time Awake Since Boot: 38000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: EXC_I386_GPFLT Exception Note: EXC_CORPSE_NOTIFY

Termination Signal: Segmentation fault: 11 Termination Reason: Namespace SIGNAL, Code 0xb Terminating Process: exc handler [56588]

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 _objc.cpython-39-darwin.so 0x00000001669bfe0d PyObjC_ffi_closure_alloc + 333 1 _objc.cpython-39-darwin.so 0x00000001669fa2c2 PyObjC_MakeStructType + 770 2 _objc.cpython-39-darwin.so 0x00000001669fc332 PyObjC_RegisterStructType + 66 3 _objc.cpython-39-darwin.so 0x00000001669e0682 createStructType + 706 4 com.continuum.python 0x0000000107192db4 cfunction_call + 52 5 com.continuum.python 0x0000000107130d88 _PyObject_MakeTpCall + 136 6 com.continuum.python 0x000000010726e1a3 call_function + 323 7 com.continuum.python 0x000000010726bb9d _PyEval_EvalFrameDefault + 43805 8 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 9 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 10 com.continuum.python 0x000000010726e10f call_function + 175 11 com.continuum.python 0x000000010726bb67 _PyEval_EvalFrameDefault + 43751 12 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 13 com.continuum.python 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com.continuum.python 0x00000001070bdaf8 main + 56 301 libdyld.dylib 0x00007fff5cf1e3d5 start + 1

Thread 1: 0 libsystem_kernel.dylib 0x00007fff5d056866 psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5d11556e _pthread_cond_wait + 722 2 libomp.dylib 0x000000010e26964b void __kmp_suspend_64<false, true>(int, kmp_flag_64<false, true>) + 299 3 libomp.dylib 0x000000010e2501b7 kmp_flag_64<false, true>::wait(kmp_info, int, void*) + 1671 4 libomp.dylib 0x000000010e24bfe6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000010e24f76d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000010e22ae8a kmp_launch_thread + 314 7 libomp.dylib 0x000000010e267eba __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 2: 0 libsystem_kernel.dylib 0x00007fff5d056866 psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5d11556e _pthread_cond_wait + 722 2 libomp.dylib 0x000000010e26964b void __kmp_suspend_64<false, true>(int, kmp_flag_64<false, true>) + 299 3 libomp.dylib 0x000000010e2501b7 kmp_flag_64<false, true>::wait(kmp_info, int, void*) + 1671 4 libomp.dylib 0x000000010e24bfe6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000010e24f76d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000010e22ae8a kmp_launch_thread + 314 7 libomp.dylib 0x000000010e267eba __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 3: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 4: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 5: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 6: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 7: 0 libsystem_kernel.dylib 0x00007fff5d054eee read + 10 1 com.continuum.python 0x00000001072f7dfa _Py_read + 122 2 com.continuum.python 0x000000010736d50f _io_FileIO_readinto + 175 3 com.continuum.python 0x0000000107140315 method_vectorcall_O + 117 4 com.continuum.python 0x00000001071335ae PyObject_VectorcallMethod + 158 5 com.continuum.python 0x00000001073787a4 _bufferedreader_raw_read + 196 6 com.continuum.python 0x00000001073757e1 _io__Buffered_read1 + 513 7 com.continuum.python 0x000000010714071a method_vectorcall_FASTCALL + 106 8 com.continuum.python 0x00000001071335ae PyObject_VectorcallMethod + 158 9 com.continuum.python 0x00000001073849db textiowrapper_read_chunk + 219 10 com.continuum.python 0x000000010738412b _textiowrapper_readline + 507 11 com.continuum.python 0x000000010714071a method_vectorcall_FASTCALL + 106 12 com.continuum.python 0x000000010726e10f call_function + 175 13 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 14 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 15 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 16 com.continuum.python 0x000000010726bd88 _PyEval_EvalFrameDefault + 44296 17 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 18 com.continuum.python 0x000000010726e10f call_function + 175 19 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 20 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 21 com.continuum.python 0x000000010726e10f call_function + 175 22 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 23 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 24 com.continuum.python 0x00000001071357df method_vectorcall + 479 25 com.continuum.python 0x0000000107363c85 t_bootstrap + 197 26 com.continuum.python 0x00000001072e53d4 pythread_wrapper + 36 27 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 28 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 29 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 8: 0 libsystem_kernel.dylib 0x00007fff5d056866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5d11556e _pthread_cond_wait + 722 2 com.continuum.python 0x00000001072e5767 PyThread_acquire_lock_timed + 327 3 com.continuum.python 0x0000000107364732 acquire_timed + 258 4 com.continuum.python 0x00000001073648dd lock_PyThread_acquire_lock + 61 5 com.continuum.python 0x0000000107140869 method_vectorcall_VARARGS_KEYWORDS + 169 6 com.continuum.python 0x000000010726e10f call_function + 175 7 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 8 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 9 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 10 com.continuum.python 0x000000010726e10f call_function + 175 11 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 12 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 13 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 14 com.continuum.python 0x000000010713569e method_vectorcall + 158 15 com.continuum.python 0x000000010726e10f call_function + 175 16 com.continuum.python 0x000000010726bc47 _PyEval_EvalFrameDefault + 43975 17 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 18 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 19 com.continuum.python 0x000000010726bd88 _PyEval_EvalFrameDefault + 44296 20 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 21 com.continuum.python 0x000000010726e10f call_function + 175 22 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 23 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 24 com.continuum.python 0x000000010726e10f call_function + 175 25 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 26 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 27 com.continuum.python 0x00000001071357df method_vectorcall + 479 28 com.continuum.python 0x0000000107363c85 t_bootstrap + 197 29 com.continuum.python 0x00000001072e53d4 pythread_wrapper + 36 30 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 31 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 32 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 9: 0 libsystem_kernel.dylib 0x00007fff5d054eee read + 10 1 com.continuum.python 0x00000001072f7dfa _Py_read + 122 2 com.continuum.python 0x000000010736d50f _io_FileIO_readinto + 175 3 com.continuum.python 0x0000000107140315 method_vectorcall_O + 117 4 com.continuum.python 0x00000001071335ae PyObject_VectorcallMethod + 158 5 com.continuum.python 0x00000001073787a4 _bufferedreader_raw_read + 196 6 com.continuum.python 0x00000001073757e1 _io__Buffered_read1 + 513 7 com.continuum.python 0x000000010714071a method_vectorcall_FASTCALL + 106 8 com.continuum.python 0x00000001071335ae PyObject_VectorcallMethod + 158 9 com.continuum.python 0x00000001073849db textiowrapper_read_chunk + 219 10 com.continuum.python 0x000000010738412b _textiowrapper_readline + 507 11 com.continuum.python 0x000000010714071a method_vectorcall_FASTCALL + 106 12 com.continuum.python 0x000000010726e10f call_function + 175 13 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 14 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 15 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 16 com.continuum.python 0x000000010726bd88 _PyEval_EvalFrameDefault + 44296 17 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 18 com.continuum.python 0x000000010726e10f call_function + 175 19 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 20 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 21 com.continuum.python 0x000000010726e10f call_function + 175 22 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 23 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 24 com.continuum.python 0x00000001071357df method_vectorcall + 479 25 com.continuum.python 0x0000000107363c85 t_bootstrap + 197 26 com.continuum.python 0x00000001072e53d4 pythread_wrapper + 36 27 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 28 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 29 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 10: 0 libsystem_kernel.dylib 0x00007fff5d056866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5d11556e _pthread_cond_wait + 722 2 com.continuum.python 0x00000001072e5767 PyThread_acquire_lock_timed + 327 3 com.continuum.python 0x0000000107364732 acquire_timed + 258 4 com.continuum.python 0x00000001073648dd lock_PyThread_acquire_lock + 61 5 com.continuum.python 0x0000000107140869 method_vectorcall_VARARGS_KEYWORDS + 169 6 com.continuum.python 0x000000010726e10f call_function + 175 7 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 8 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 9 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 10 com.continuum.python 0x000000010726e10f call_function + 175 11 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 12 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 13 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 14 com.continuum.python 0x000000010713569e method_vectorcall + 158 15 com.continuum.python 0x000000010726e10f call_function + 175 16 com.continuum.python 0x000000010726bc47 _PyEval_EvalFrameDefault + 43975 17 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 18 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 19 com.continuum.python 0x000000010726bd88 _PyEval_EvalFrameDefault + 44296 20 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 21 com.continuum.python 0x000000010726e10f call_function + 175 22 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 23 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 24 com.continuum.python 0x000000010726e10f call_function + 175 25 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 26 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 27 com.continuum.python 0x00000001071357df method_vectorcall + 479 28 com.continuum.python 0x0000000107363c85 t_bootstrap + 197 29 com.continuum.python 0x00000001072e53d4 pythread_wrapper + 36 30 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 31 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 32 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 11: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 12: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 13: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 14:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff5d05321a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff5d053768 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff30f8ae0e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff30f8a37c CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff30f89ade CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff2e587bae _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 15: 0 libsystem_pthread.dylib 0x00007fff5d1113f0 start_wqthread + 0

Thread 16: 0 libsystem_kernel.dylib 0x00007fff5d056866 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff5d11556e _pthread_cond_wait + 722 2 com.continuum.python 0x00000001072e57f4 PyThread_acquire_lock_timed + 468 3 com.continuum.python 0x0000000107364732 acquire_timed + 258 4 com.continuum.python 0x00000001073648dd lock_PyThread_acquire_lock + 61 5 com.continuum.python 0x0000000107140869 method_vectorcall_VARARGS_KEYWORDS + 169 6 com.continuum.python 0x000000010726e10f call_function + 175 7 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 8 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 9 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 10 com.continuum.python 0x000000010726e10f call_function + 175 11 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 12 com.continuum.python 0x000000010725f834 _PyEval_EvalCode + 548 13 com.continuum.python 0x000000010713222b _PyFunction_Vectorcall + 427 14 com.continuum.python 0x000000010726e10f call_function + 175 15 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 16 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 17 com.continuum.python 0x000000010726e10f call_function + 175 18 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 19 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 20 com.continuum.python 0x000000010726e10f call_function + 175 21 com.continuum.python 0x000000010726bad4 _PyEval_EvalFrameDefault + 43604 22 com.continuum.python 0x0000000107132172 _PyFunction_Vectorcall + 242 23 com.continuum.python 0x00000001071357df method_vectorcall + 479 24 com.continuum.python 0x0000000107363c85 t_bootstrap + 197 25 com.continuum.python 0x00000001072e53d4 pythread_wrapper + 36 26 libsystem_pthread.dylib 0x00007fff5d1122eb _pthread_body + 126 27 libsystem_pthread.dylib 0x00007fff5d115249 _pthread_start + 66 28 libsystem_pthread.dylib 0x00007fff5d11140d thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit): rax: 0xf6ee84b15a84003b rbx: 0x454c4d5846435f7b rcx: 0x000000000000000a rdx: 0x0000000000000000 rdi: 0x00007ffee8b34b18 rsi: 0x000000000000000f rbp: 0x00007ffee8b34ad0 rsp: 0x00007ffee8b349a0 r8: 0x0000000100000000 r9: 0x17a03c63af595fa0 r10: 0x0000000160b19028 r11: 0x0000000000000080 r12: 0x0000000166aeb5d0 r13: 0x0000000166ae7d30 r14: 0x00007ffee8b34b18 r15: 0x0000000166ae7db0 rip: 0x00000001669bfe0d rfl: 0x0000000000010206 cr2: 0x0000000166aec020

Logical CPU: 2 Error Code: 0x00000000 Trap Number: 13

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0x7fff5c07bff3 libsandbox.1.dylib (851.270.6) <0A858BB9-9BCC-376B-8899-69C56AA36D5F> /usr/lib/libsandbox.1.dylib 0x7fff5c08f000 - 0x7fff5c090ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib 0x7fff5c091000 - 0x7fff5c26efff libsqlite3.dylib (274.26) <6404BA3B-BCA4-301F-B2FE-8776105A2AA3> /usr/lib/libsqlite3.dylib 0x7fff5c487000 - 0x7fff5c48aff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib 0x7fff5c48b000 - 0x7fff5c498fff libxar.1.dylib (417.1) <39CCF46B-C81A-34B1-92A1-58C4E5DA846E> /usr/lib/libxar.1.dylib 0x7fff5c49d000 - 0x7fff5c580fff libxml2.2.dylib (32.20) <3C0B6DA4-821C-3A1B-BB96-80DCC0B0939D> /usr/lib/libxml2.2.dylib 0x7fff5c581000 - 0x7fff5c5a9ff3 libxslt.1.dylib (16.7.3) /usr/lib/libxslt.1.dylib 0x7fff5c5aa000 - 0x7fff5c5bcff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib 0x7fff5cda0000 - 0x7fff5cda4ff3 libcache.dylib (81) <1987D1E1-DB11-3291-B12A-EBD55848E02D> /usr/lib/system/libcache.dylib 0x7fff5cda5000 - 0x7fff5cdafff3 libcommonCrypto.dylib (60118.250.2) <1765BB6E-6784-3653-B16B-CB839721DC9A> /usr/lib/system/libcommonCrypto.dylib 0x7fff5cdb0000 - 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0x7fff5cf49fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib 0x7fff5cf4a000 - 0x7fff5cf4cff7 libquarantine.dylib (86.270.1) <3F36A3D6-9606-3D90-B520-809BAEF981C3> /usr/lib/system/libquarantine.dylib 0x7fff5cf4d000 - 0x7fff5cf4eff7 libremovefile.dylib (45.200.2) <9FBEB2FF-EEBE-31BC-BCFC-C71F8D0E99B6> /usr/lib/system/libremovefile.dylib 0x7fff5cf4f000 - 0x7fff5cf66ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff5cf67000 - 0x7fff5cf67ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff5cf68000 - 0x7fff5cfeffff libsystem_c.dylib (1272.250.3) <6016EDA1-440B-34D7-A232-686CD7FBEE90> /usr/lib/system/libsystem_c.dylib 0x7fff5cff0000 - 0x7fff5cff3ffb libsystem_configuration.dylib (963.270.4) <22D75BE2-9672-337A-9BA5-878D69DAB93D> /usr/lib/system/libsystem_configuration.dylib 0x7fff5cff4000 - 0x7fff5cff7ff7 libsystem_coreservices.dylib (66.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff5cff8000 - 0x7fff5cffefff libsystem_darwin.dylib (1272.250.3) /usr/lib/system/libsystem_darwin.dylib 0x7fff5cfff000 - 0x7fff5d005ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff5d006000 - 0x7fff5d051ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff5d052000 - 0x7fff5d07aff7 libsystem_kernel.dylib (4903.278.70) <35EE704F-F9B6-3531-B312-E45CFA2A8743> /usr/lib/system/libsystem_kernel.dylib 0x7fff5d07b000 - 0x7fff5d0c6ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff5d0c7000 - 0x7fff5d0f1fff libsystem_malloc.dylib (166.270.1) <011F3AD0-8E6A-3A89-AE64-6E5F6840F30A> /usr/lib/system/libsystem_malloc.dylib 0x7fff5d0f2000 - 0x7fff5d0fcff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff5d0fd000 - 0x7fff5d104fff libsystem_notify.dylib (172.200.21) <145B5CFC-CF73-33CE-BD3D-E8DDE268FFDE> /usr/lib/system/libsystem_notify.dylib 0x7fff5d105000 - 0x7fff5d10efef libsystem_platform.dylib (177.270.1) <9D1FE5E4-EB7D-3B3F-A8D1-A96D9CF1348C> /usr/lib/system/libsystem_platform.dylib 0x7fff5d10f000 - 0x7fff5d119ff7 libsystem_pthread.dylib (330.250.2) <2D5C08FF-484F-3D59-9132-CE1DCB3F76D7> /usr/lib/system/libsystem_pthread.dylib 0x7fff5d11a000 - 0x7fff5d11dff7 libsystem_sandbox.dylib (851.270.6) <390BE353-BC0C-3E4C-9167-0D973F0DD822> /usr/lib/system/libsystem_sandbox.dylib 0x7fff5d11e000 - 0x7fff5d120ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff5d121000 - 0x7fff5d128ff3 libsystem_symptoms.dylib (820.267.2) <0DA60956-0403-3456-9D6A-11F2DB9E3819> /usr/lib/system/libsystem_symptoms.dylib 0x7fff5d129000 - 0x7fff5d13eff7 libsystem_trace.dylib (906.260.3) <5B6FAE61-EF5C-381F-B71B-9B6F6428FEE2> /usr/lib/system/libsystem_trace.dylib 0x7fff5d140000 - 0x7fff5d145ffb libunwind.dylib (35.4) <24A97A67-F017-3CFC-B0D0-6BD0224B1336> /usr/lib/system/libunwind.dylib 0x7fff5d146000 - 0x7fff5d175fff libxpc.dylib (1336.261.7) <404F0E1A-30BC-3CFB-98D3-4A2167CC2AB8> /usr/lib/system/libxpc.dylib

External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 1 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 617853 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=621.3M resident=0K(0%) swapped_out_or_unallocated=621.3M(100%) Writable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 CG backing stores 1160K 2 CG image 1168K 5 CG raster data 260K 1 CoreAnimation 16.6M 10 CoreGraphics 8K 1 CoreImage 24K 2 CoreUI image data 1168K 11 CoreUI image file 216K 5 Dispatch continuations 16.0M 1 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 138.9M 89 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) Memory Tag 242 12K 1 STACK GUARD 68K 17 Stack 116.6M 17 VM_ALLOCATE 476.4M 145 VM_ALLOCATE (reserved) 768.0M 3 reserved VM address space (unallocated) DATA 75.6M 541 FONT_DATA 4K 1 GLSLBUILTINS 5176K 1 LINKEDIT 241.9M 207 TEXT 379.4M 476 UNICODE 564K 1 mapped file 53.6M 20 shared memory 636K 9 =========== ======= ======= TOTAL 2.2G 1579 TOTAL, minus reserved VM space 1.5G 1579

Any insights on why this may be happening?

[joshuacwnewton]

I've been working with @abadgerw to try to get to the bottom of this issue, and we were able to fix it by following this note on the FSLeyes installation instruction page:

On macOS, if you experience segmentation faults after updating FSLeyes, try running: $FSLDIR/fslpython/bin/conda install -n fslpython -c conda-forge libffi=3.3

Specifically, when installing FSLeyes into a fresh conda environment, we used this command:

conda install -c conda-forge fsleyes libffi=3.3

I'm also curious if this issue is related to MacOS 10.14.

But, either way, I think we have resolved this issue on our end. 🙂

[pauldmccarthy]

Hi @abadgerw, @joshuacwnewton good to hear you resolved the problem - one comment I have is that it is usually a very bad idea to install anything into your base anaconda/miniconda environment - in your specific case, you are using anaconda, so the base environment has packages sourced from the defaults channel. Attempting to install packages from the conda-forge channel into this environment will result in all sorts of problems, as you are effectively asking conda to replace all of the existing defaults packages with their conda-forge equivalents. So you should leave the base environment, and only ever install things into child environments.

Installing an older version of libffi works around an issue with some other libraries which are in the process of being resolved, so hopefully this work around won't be necessary in the very near future.