Closed paulflang closed 4 years ago
Made necessary changes in jump_script.jl in a1869ba. Could you make the corresponding changes in core.py?
Also, it would be helpful to include a bash or python script for this example.
Thanks a lot. I'll make the changes to core.py.
Also, it would be helpful to include a bash or python script for this example.
Do you mean a script to run the translation of PEtab to JuMP?
Hi Paul,
Also, it would be helpful to include a bash or python script for this example.
Yes. Sorry if it was already in the repo and I wasn't finding it.
Thanks, Sungho
On Tue, Jun 9, 2020 at 6:25 PM paulflang notifications@github.com wrote:
Thanks a lot. I'll make the changes to core.py.
Also, it would be helpful to include a bash or python script for this example.
Do you mean a script to run the translation of PEtab to JuMP?
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I just pushed c7cf5f31036030c7905d91306e05de6874514d78 to the
multi_exp
branch. I think the new code should correctly translate the PEtab problem specified inDisfit/tests/fixtures/G2M_copasi
to a Julia JuMP problem (seeDisFit/julia_code.jl
). Unfortunately, when running the optimization I seem to run out of memory. @sshin23 : do you have any suggestions of how to solve this?