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paulgeeleher / pRRophetic

R package
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get data of CCLE #3

Open XLuHouston opened 6 years ago

XLuHouston commented 6 years ago

Hi Paul,

I successfully finished the GDSC analysis and I am trying to confirm my results in CCLE data.

It is perfect that there is a getGCPinfo() in your package, but how to get CCLE data with R cmd?

In the guide.pdf, the following code seems to load a specific drug data in CCLE. data(ccleData) #sensDataCcle, exprMatCcle

Thus, how to get other drug's data in CCLE?

Thank you for reading this issue and I will be greatly appreciated if you can give me some hints! :)

Best, Lucas

paulgeeleher commented 6 years ago

Hi,

If you're interested in the CCLE data, and updated CTRP data, I haven't built those into the package yet, so you'd need to download the data and build those models manually.