paulhager / MMCL-Tabular-Imaging

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DVM Preprocessing Error: No such file or directory: 'features/dvm_features_train_noOH_all_views_physical_jittered_50.csv' #10

Closed carrtesy closed 9 months ago

carrtesy commented 9 months ago

Hello,

First of all, thanks for your great work.

I'd like to ask questions regarding your dvm datasets preprocessing jupyter notebook code.

I works well till "Check transform" cells, but it complains when we try to execute the cell right below.

image

What might be relevant is the cell after, which defines the function add_jitter. But it also complains, as "Ad_table_physical_filled.csv" does not exist.

image

what might be relevant is another cell that loads "Ad table (extra).csv", but I don't know what this file is, and cannot find in DVM folder.

image

May I ask how can I handle this problem?

Thanks in advance,

Carrtesy

paulhager commented 9 months ago

Hi Carrtesy,

Ah, good catch, I've now moved that cell down to the very end, after the physical jittered files have been created.

The Ad table (extra) file you can download along with the rest of the DVM data (https://figshare.com/articles/figure/DVM-CAR_Dataset/19586296/2)

Best, Paul

carrtesy commented 9 months ago

Thanks for your answer. But I still got a problem at the cell at the very end. are there any fix for it?

image
paulhager commented 9 months ago

ah, yeah I had multiple names for the files still in my folder. Sorry about that, I fixed it now.

carrtesy commented 9 months ago

Cool, all works well. Thanks for your help!

Best, Carrtesy