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pauline-ng / SIFT4G_Create_Genomic_DB

Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.
GNU General Public License v3.0
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Avoiding to rezip chr-src/ in final steps #1

Closed EvelyneC closed 7 years ago

EvelyneC commented 7 years ago

Hi,

Is it possible to avoid rezipping chr-src in the final steps? This would speed up creating a new database, depending on the species this could be significant.

regards, Evelyne

pauline-ng commented 7 years ago

Try commenting out line 70 in make-SIFT-db-all.pl

Change `gunzip $fasta_dir`; to # `gunzip $fasta_dir`;

Let me know if that doesn't work.