Error when run the SIFT Algorithm

pauline-ng / SIFT4G_Create_Genomic_DB

Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.

GNU General Public License v3.0

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Error when run the SIFT Algorithm #37

Closed zhansia closed 3 years ago

zhansia commented 3 years ago

Hi, pauline ng , I am sry, I just realise that I didn't install the sift4g algorithm file, but when I run the command 'make', it pop out the error as below:

[CP] src/select_alignments.cpp In file included from src/select_alignments.cpp:16:0: src/select_alignments.hpp:15:29: fatal error: swsharp/swsharp.h: No such file or directory compilation terminated. Makefile:39: recipe for target 'obj/select_alignments.o' failed make: *** [obj/select_alignments.o] Error 1

rvaser commented 3 years ago

Hi, did you clone the SIFT4G repository with --recursive? If not, run git submodule update --init --recursive inside SIFT4G directory and then run make.

Best regards, Robert

zhansia commented 3 years ago

Ya, I did it and it was ok, thks

On Mon, Dec 21, 2020 at 1:58 PM Robert Vaser notifications@github.com wrote:

Hi, did you clone the SIFT4G repository with --recursive? If not, run git submodule update --init --recursive inside SIFT4G directory and then run make.

Best regards, Robert

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