pauline-ng / SIFT4G_Create_Genomic_DB

Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.
GNU General Public License v3.0
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processing database part 975 than finish,and nothing generate #58

Closed wpf95 closed 2 years ago

wpf95 commented 2 years ago

Hi,pauline-ng,it always processing database part 975,than done, it can not go next,so what happened ?i want know,it is a big problem that i can not resolve.

converting gene format to use-able input done converting gene format making single records file done making single records template making noncoding records file done making noncoding records make the fasta sequences done making the fasta sequences start siftsharp, getting the alignments /home/Wangpengfei/anaconda3/envs/sift4g/bin/sift4g -d /home/Wangpengfei/sift4g/SIFT4G_Create_Genomic_DB-master/nr -q /home/Wangpengfei/sift4g/SIFT4G_Create_Genomic_DB-master/test_files/bovine_ncbi/all_prot.fasta --subst /home/Wangpengfei/sift4g/SIFT4G_Create_Genomic_DB-master/test_files/bovine_ncbi/subst --out /home/Wangpengfei/sift4g/SIFT4G_Create_Genomic_DB Checking query data and substitutions files

pauline-ng commented 2 years ago

Please open this issue on https://github.com/rvaser/sift4g