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paulklemm / mygo

Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
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Tidy up output figures #1

Open paulklemm opened 4 years ago

paulklemm commented 4 years ago

People are usually overwhelmed by the mygo output. The report needs to be slimmed down. Maybe put the complex plots into a separate file.

paulklemm commented 4 years ago

Include the following figures from https://yulab-smu.github.io/clusterProfiler-book/chapter12.html:

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Maybe custom plot guided by this: https://yulab-smu.github.io/clusterProfiler-book/chapter13.html

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Attaching the fold change to a GO-term enrichment to create something like this:

image

paulklemm commented 4 years ago

We've overhauled the plots. One cool plot would be to overlap the DE genes in each regulated GO-term with it's fold change and then create a ridge-plot for this. This already exists for GSEA, but not for the GO-terms