Bump alembic from 1.12.0 to 1.13.1 in /backend

[dependabot[bot]]

Bumps alembic from 1.12.0 to 1.13.1.

Release notes

Sourced from alembic's releases.

1.13.1

Released: December 20, 2023

bug

• [bug] [autogenerate] Fixed Rewriter so that more than two instances could be chained together correctly, also allowing multiple process_revision_directives callables to be chained. Pull request courtesy zrotceh.

  References: #1337

• [bug] [environment] Fixed issue where the method EnvironmentContext.get_x_argument() using the EnvironmentContext.get_x_argument.as_dictionary parameter would fail if an argument key were passed on the command line as a name alone, that is, without an equal sign = or a value. Behavior is repaired where this condition is detected and will return a blank string for the given key, consistent with the behavior where the = sign is present and no value. Pull request courtesy Iuri de Silvio.

  References: #1369

• [bug] [autogenerate] Fixed issue where the "unique" flag of an Index would not be maintained when generating downgrade migrations. Pull request courtesy Iuri de Silvio.

  References: #1370

• [bug] [versioning] Fixed bug in versioning model where a downgrade across a revision with two down revisions with one down revision depending on the other, would produce an erroneous state in the alembic_version table, making upgrades impossible without manually repairing the table. Thanks much to Saif Hakim for the great work on this.

  References: #1373

• [bug] [typing] Updated pep-484 typing to pass mypy "strict" mode, however including per-module qualifications for specific typing elements not yet complete. This allows us to catch specific typing issues that have been ongoing such as import symbols not properly exported.

  References: #1377

1.13.0

Released: December 1, 2023

changed

... (truncated)

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[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (9321bec) 100.00% compared to head (b0aa3af) 100.00%. Report is 1 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #484 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/484/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/484/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

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[github-actions[bot]]

Overview

Image reference	psisharedsharedchncr001.azurecr.io/alphafold:edge	psisharedsharedchncr001.azurecr.io/alphafold:pr-484
- digest	31d61d1ad773	cee963849512
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/9321bec7b5721b30bc83900704e40692abbef182	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/b0aa3af49df582d88fe0a6625fc96d10cd3740bd
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	67 MB (+8.4 MB)
- packages	110	110
Base Image	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19
- vulnerabilities

Environment Variables (2 changes)

> * `±` 2 changed > * _8 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=9321bec7b5721b30bc83900704e40692abbef182 +RELEASE_ID=b0aa3af49df582d88fe0a6625fc96d10cd3740bd -VERSION=edge +VERSION=pr-484 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-19T12:20:47.224Z +org.opencontainers.image.created=2024-01-19T12:21:54.479Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=9321bec7b5721b30bc83900704e40692abbef182 +org.opencontainers.image.revision=b0aa3af49df582d88fe0a6625fc96d10cd3740bd org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-484 ```

Packages and Vulnerabilities (1 package changes and 0 vulnerability changes)

> * :infinity: 1 packages changed > * 109 packages unchanged

Changes for packages of type pypi (1 changes)

	Package	Version psisharedsharedchncr001.azurecr.io/alphafold:edge	Version psisharedsharedchncr001.azurecr.io/alphafold:pr-484
:infinity:	alembic	1.12.0	1.13.1