Bump ruff from 0.1.14 to 0.2.0 in /backend

dependabot[bot] commented 10 months ago

Bumps ruff from 0.1.14 to 0.2.0.

Release notes

v0.2.0

Check out the blog post for a migration guide and overview of the changes!

Changes

Breaking changes

The NURSERY selector cannot be used anymore

Legacy selection of nursery rules by exact codes is no longer allowed without preview enabled

See also, the "Remapped rules" section which may result in disabled rules.

Deprecations

The following rules are now deprecated:

missing-type-self (ANN101)

missing-type-cls (ANN102)

The following command line options are now deprecated:

--show-source; use --output-format full instead

--no-show-source; use --output-format concise instead

--output-format text; use full or concise instead

The following settings have moved and the previous name is deprecated:

ruff.allowed-confusables → ruff.lint.allowed-confusables

ruff.dummy-variable-rgx → ruff.lint.dummy-variable-rgx

ruff.explicit-preview-rules → ruff.lint.explicit-preview-rules

ruff.extend-fixable → ruff.lint.extend-fixable

ruff.extend-ignore → ruff.lint.extend-ignore

ruff.extend-per-file-ignores → ruff.lint.extend-per-file-ignores

ruff.extend-safe-fixes → ruff.lint.extend-safe-fixes

ruff.extend-select → ruff.lint.extend-select

ruff.extend-unfixable → ruff.lint.extend-unfixable

ruff.extend-unsafe-fixes → ruff.lint.extend-unsafe-fixes

ruff.external → ruff.lint.external

ruff.fixable → ruff.lint.fixable

ruff.flake8-annotations → ruff.lint.flake8-annotations

ruff.flake8-bandit → ruff.lint.flake8-bandit

ruff.flake8-bugbear → ruff.lint.flake8-bugbear

ruff.flake8-builtins → ruff.lint.flake8-builtins

ruff.flake8-comprehensions → ruff.lint.flake8-comprehensions

ruff.flake8-copyright → ruff.lint.flake8-copyright

ruff.flake8-errmsg → ruff.lint.flake8-errmsg

ruff.flake8-gettext → ruff.lint.flake8-gettext

ruff.flake8-implicit-str-concat → ruff.lint.flake8-implicit-str-concat

ruff.flake8-import-conventions → ruff.lint.flake8-import-conventions

ruff.flake8-pytest-style → ruff.lint.flake8-pytest-style

... (truncated)

Changelog

Sourced from ruff's changelog.

0.2.0

Breaking changes

The NURSERY selector cannot be used anymore

Legacy selection of nursery rules by exact codes is no longer allowed without preview enabled

See also, the "Remapped rules" section which may result in disabled rules.

Deprecations

The following rules are now deprecated:

missing-type-self (ANN101)

missing-type-cls (ANN102)

The following command line options are now deprecated:

--show-source; use --output-format full instead

--no-show-source; use --output-format concise instead

--output-format text; use full or concise instead

The following settings have moved and the previous name is deprecated:

ruff.allowed-confusables → ruff.lint.allowed-confusables

ruff.dummy-variable-rgx → ruff.lint.dummy-variable-rgx

ruff.explicit-preview-rules → ruff.lint.explicit-preview-rules

ruff.extend-fixable → ruff.lint.extend-fixable

ruff.extend-ignore → ruff.lint.extend-ignore

ruff.extend-per-file-ignores → ruff.lint.extend-per-file-ignores

ruff.extend-safe-fixes → ruff.lint.extend-safe-fixes

ruff.extend-select → ruff.lint.extend-select

ruff.extend-unfixable → ruff.lint.extend-unfixable

ruff.extend-unsafe-fixes → ruff.lint.extend-unsafe-fixes

ruff.external → ruff.lint.external

ruff.fixable → ruff.lint.fixable

ruff.flake8-annotations → ruff.lint.flake8-annotations

ruff.flake8-bandit → ruff.lint.flake8-bandit

ruff.flake8-bugbear → ruff.lint.flake8-bugbear

ruff.flake8-builtins → ruff.lint.flake8-builtins

ruff.flake8-comprehensions → ruff.lint.flake8-comprehensions

ruff.flake8-copyright → ruff.lint.flake8-copyright

ruff.flake8-errmsg → ruff.lint.flake8-errmsg

ruff.flake8-gettext → ruff.lint.flake8-gettext

ruff.flake8-implicit-str-concat → ruff.lint.flake8-implicit-str-concat

ruff.flake8-import-conventions → ruff.lint.flake8-import-conventions

ruff.flake8-pytest-style → ruff.lint.flake8-pytest-style

ruff.flake8-quotes → ruff.lint.flake8-quotes

ruff.flake8-self → ruff.lint.flake8-self

ruff.flake8-tidy-imports → ruff.lint.flake8-tidy-imports

... (truncated)

Commits

1fadefa Bump version to 0.2.0 (#9762)
06ad687 Deduplicate deprecation warnings for v0.2.0 release (#9764)
148b64e Fix issue where output format mode would not change to full if preview mode...
99eddbd Remove stale preview documentation from stabilized rule behaviors (#9759)
836d2ea Restore RUF011 documentation (#9758)
994514d Redirect PHG001 to S307 and PGH002 to G010 (#9756)
a578414 Redirect TRY200 to B904 (#9755)
0d752e5 Add tests for redirected rules (#9754)
46c0937 Use fake rules for testing deprecation and removal infrastructure (#9752)
e5008ca Fix bug where selection included deprecated rules during preview (#9746)
Additional commits viewable in compare view

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codecov[bot] commented 10 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (de3ef77) 100.00% compared to head (bfe2756) 100.00%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #507 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/507/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/507/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

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github-actions[bot] commented 10 months ago

Overview

Image reference	`psisharedsharedchncr001.azurecr.io/alphafold:edge`	`psisharedsharedchncr001.azurecr.io/alphafold:pr-507`
- digest	`35cc0232bf90`	`fbe6cd6b7347`
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/bfe2756d23ebabe7748d4520c8917c9f6e039e5f
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	67 MB (+8.4 MB)
- packages	110	110
Base Image	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`
- vulnerabilities

Environment Variables (2 changes)

> * `±` 2 changed > * _8 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=bfe2756d23ebabe7748d4520c8917c9f6e039e5f -VERSION=edge +VERSION=pr-507 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-02-02T14:51:40.231Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=bfe2756d23ebabe7748d4520c8917c9f6e039e5f org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-507 ```

Packages and Vulnerabilities (6 package changes and 3 vulnerability changes)

> * :infinity: 6 packages changed > * 104 packages unchanged > * :heavy_check_mark: 3 vulnerabilities removed

Changes for packages of type apk (6 changes)

	Package	Version `psisharedsharedchncr001.azurecr.io/alphafold:edge`	Version `psisharedsharedchncr001.azurecr.io/alphafold:pr-507`
:infinity:	.python-rundeps	`20231209.013648`	`20240127.073042`
:infinity:	libcrypto3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	libssl3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	openssl	`3.1.4-r2`	`3.1.4-r5`

		Removed vulnerabilities (3):
:infinity:	tzdata	`2023c-r1`	`2023d-r0`
:infinity:	zlib	`1.3-r2`	`1.3.1-r0`