Bump cryptography from 41.0.7 to 42.0.0 in /backend

[dependabot[bot]]

Bumps cryptography from 41.0.7 to 42.0.0.

Changelog

Sourced from cryptography's changelog.

42.0.0 - 2024-01-22

* **BACKWARDS INCOMPATIBLE:** Dropped support for LibreSSL < 3.7.
* **BACKWARDS INCOMPATIBLE:** Loading a PKCS7 with no content field using
  :func:`~cryptography.hazmat.primitives.serialization.pkcs7.load_pem_pkcs7_certificates`
  or
  :func:`~cryptography.hazmat.primitives.serialization.pkcs7.load_der_pkcs7_certificates`
  will now raise a ``ValueError`` rather than return an empty list.
* Parsing SSH certificates no longer permits malformed critical options with
  values, as documented in the 41.0.2 release notes.
* Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.2.0.
* Updated the minimum supported Rust version (MSRV) to 1.63.0, from 1.56.0.
* We now publish both ``py37`` and ``py39`` ``abi3`` wheels. This should
  resolve some errors relating to initializing a module multiple times per
  process.
* Support :class:`~cryptography.hazmat.primitives.asymmetric.padding.PSS` for
  X.509 certificate signing requests and certificate revocation lists with the
  keyword-only argument ``rsa_padding`` on the ``sign`` methods for
  :class:`~cryptography.x509.CertificateSigningRequestBuilder` and
  :class:`~cryptography.x509.CertificateRevocationListBuilder`.
* Added support for obtaining X.509 certificate signing request signature
  algorithm parameters (including PSS) via
  :meth:`~cryptography.x509.CertificateSigningRequest.signature_algorithm_parameters`.
* Added support for obtaining X.509 certificate revocation list signature
  algorithm parameters (including PSS) via
  :meth:`~cryptography.x509.CertificateRevocationList.signature_algorithm_parameters`.
* Added ``mgf`` property to
  :class:`~cryptography.hazmat.primitives.asymmetric.padding.PSS`.
* Added ``algorithm`` and ``mgf`` properties to
  :class:`~cryptography.hazmat.primitives.asymmetric.padding.OAEP`.
* Added the following properties that return timezone-aware ``datetime`` objects:
  :meth:`~cryptography.x509.Certificate.not_valid_before_utc`,
  :meth:`~cryptography.x509.Certificate.not_valid_after_utc`,
  :meth:`~cryptography.x509.RevokedCertificate.revocation_date_utc`,
  :meth:`~cryptography.x509.CertificateRevocationList.next_update_utc`,
  :meth:`~cryptography.x509.CertificateRevocationList.last_update_utc`.
  These are timezone-aware variants of existing properties that return naïve
  ``datetime`` objects.
* Deprecated the following properties that return naïve ``datetime`` objects:
  :meth:`~cryptography.x509.Certificate.not_valid_before`,
  :meth:`~cryptography.x509.Certificate.not_valid_after`,
  :meth:`~cryptography.x509.RevokedCertificate.revocation_date`,
  :meth:`~cryptography.x509.CertificateRevocationList.next_update`,
  :meth:`~cryptography.x509.CertificateRevocationList.last_update`
  in favor of the new timezone-aware variants mentioned above.
* Added support for
  :class:`~cryptography.hazmat.primitives.ciphers.algorithms.ChaCha20`
  on LibreSSL.
* Added support for RSA PSS signatures in PKCS7 with
</tr></table> 

... (truncated)

Commits

• 4e64baf 42.0.0 version bump (#10232)
• 7cb13a3 we'll ship 3.2.0 for 42 (#9951)
• 605c74e Bump x509-limbo and/or wycheproof in CI (#10231)
• 97578b9 Bump BoringSSL and/or OpenSSL in CI (#10230)
• 972a7b5 verification: add test_verify_tz_aware (#10229)
• 41daf2d Migrate PKCS7 backend to Rust (#10228)
• d54093e Remove some skips in tests that aren't needed anymore (#10223)
• 71929bd Remove binding that's not used anymore (#10224)
• 7ea4b89 fixed formatting in changelog (#10225)
• 410f4a1 Allow brainpool on libressl (#10222)
• Additional commits viewable in compare view

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[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (de3ef77) 100.00% compared to head (05db654) 100.00%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #511 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/511/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/511/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

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[github-actions[bot]]

Overview

Image reference	psisharedsharedchncr001.azurecr.io/alphafold:edge	psisharedsharedchncr001.azurecr.io/alphafold:pr-511
- digest	35cc0232bf90	d8007d064621
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/05db6547dc5a96b89ae21289a358836de42ab5aa
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	68 MB (+8.6 MB)
- packages	110	110
Base Image	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19
- vulnerabilities

Environment Variables (2 changes)

> * `±` 2 changed > * _8 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=05db6547dc5a96b89ae21289a358836de42ab5aa -VERSION=edge +VERSION=pr-511 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-02-06T03:28:05.442Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=05db6547dc5a96b89ae21289a358836de42ab5aa org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-511 ```

Packages and Vulnerabilities (8 package changes and 3 vulnerability changes)

> * :infinity: 8 packages changed > * 102 packages unchanged > * :heavy_check_mark: 3 vulnerabilities removed

Changes for packages of type apk (6 changes)

	Package	Version psisharedsharedchncr001.azurecr.io/alphafold:edge	Version psisharedsharedchncr001.azurecr.io/alphafold:pr-511
:infinity:	.python-rundeps	20231209.013648	20240127.073042
:infinity:	libcrypto3	3.1.4-r2	3.1.4-r5
:infinity:	libssl3	3.1.4-r2	3.1.4-r5
:infinity:	openssl	3.1.4-r2	3.1.4-r5
		Removed vulnerabilities (3):
:infinity:	tzdata	2023c-r1	2023d-r0
:infinity:	zlib	1.3-r2	1.3.1-r0

Changes for packages of type pypi (2 changes)

	Package	Version psisharedsharedchncr001.azurecr.io/alphafold:edge	Version psisharedsharedchncr001.azurecr.io/alphafold:pr-511
:infinity:	cryptography	41.0.7	42.0.0
:infinity:	pip	23.3.2	24.0

[dependabot[bot]]

Superseded by #518.