Bump cryptography from 41.0.7 to 42.0.2 in /backend

[dependabot[bot]]

Bumps cryptography from 41.0.7 to 42.0.2.

Changelog

Sourced from cryptography's changelog.

42.0.2 - 2024-01-30

* Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.2.1.
* Fixed an issue that prevented the use of Python buffer protocol objects in
  ``sign`` and ``verify`` methods on asymmetric keys.
* Fixed an issue with incorrect keyword-argument naming with ``EllipticCurvePrivateKey``
  :meth:`~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.exchange`,
  ``X25519PrivateKey``
  :meth:`~cryptography.hazmat.primitives.asymmetric.x25519.X25519PrivateKey.exchange`,
  ``X448PrivateKey``
  :meth:`~cryptography.hazmat.primitives.asymmetric.x448.X448PrivateKey.exchange`,
  and ``DHPrivateKey``
  :meth:`~cryptography.hazmat.primitives.asymmetric.dh.DHPrivateKey.exchange`.
.. _v42-0-1:
42.0.1 - 2024-01-24

• Fixed an issue with incorrect keyword-argument naming with EllipticCurvePrivateKey :meth:~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.sign.
• Resolved compatibility issue with loading certain RSA public keys in :func:~cryptography.hazmat.primitives.serialization.load_pem_public_key.

.. _v42-0-0:

42.0.0 - 2024-01-22

* **BACKWARDS INCOMPATIBLE:** Dropped support for LibreSSL < 3.7.
* **BACKWARDS INCOMPATIBLE:** Loading a PKCS7 with no content field using
  :func:`~cryptography.hazmat.primitives.serialization.pkcs7.load_pem_pkcs7_certificates`
  or
  :func:`~cryptography.hazmat.primitives.serialization.pkcs7.load_der_pkcs7_certificates`
  will now raise a ``ValueError`` rather than return an empty list.
* Parsing SSH certificates no longer permits malformed critical options with
  values, as documented in the 41.0.2 release notes.
* Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.2.0.
* Updated the minimum supported Rust version (MSRV) to 1.63.0, from 1.56.0.
* We now publish both ``py37`` and ``py39`` ``abi3`` wheels. This should
  resolve some errors relating to initializing a module multiple times per
  process.
* Support :class:`~cryptography.hazmat.primitives.asymmetric.padding.PSS` for
  X.509 certificate signing requests and certificate revocation lists with the
  keyword-only argument ``rsa_padding`` on the ``sign`` methods for
  :class:`~cryptography.x509.CertificateSigningRequestBuilder` and
  :class:`~cryptography.x509.CertificateRevocationListBuilder`.
* Added support for obtaining X.509 certificate signing request signature
  algorithm parameters (including PSS) via
</tr></table> 

... (truncated)

Commits

• 2202123 changelog and version bump 42.0.2 (#10268)
• f7032bd bump openssl in CI (#10298) (#10299)
• 002e886 Fixes #10294 -- correct accidental change to exchange kwarg (#10295) (#10296)
• 92fa9f2 support bytes-like consistently across our asym sign/verify APIs (#10260) (#1...
• 6478f7e explicitly support bytes-like for signature/data in RSA sign/verify (#10259) ...
• 4bb8596 fix the release script (#10233) (#10254)
• 337437d 42.0.1 bump (#10252)
• 56255de allow SPKI RSA keys to be parsed even if they have an incorrect delimiter (#1...
• 12f038b fixes #10237 -- correct EC sign parameter name (#10239) (#10240)
• 4e64baf 42.0.0 version bump (#10232)
• Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

---

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) You can disable automated security fix PRs for this repo from the [Security Alerts page](https://github.com/paulscherrerinstitute/alphafold-on-fire/network/alerts).

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (de3ef77) 100.00% compared to head (10d466d) 100.00%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #518 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/518/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/518/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

[github-actions[bot]]

Overview

Image reference	psisharedsharedchncr001.azurecr.io/alphafold:edge	psisharedsharedchncr001.azurecr.io/alphafold:pr-518
- digest	35cc0232bf90	ae0707f7f1c6
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/10d466d8664e1e926b8707e1d6d78c91bfe6a638
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	68 MB (+8.6 MB)
- packages	110	110
Base Image	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19	python:3.10-alpine also known as: • 3.10-alpine3.19 • 3.10.13-alpine • 3.10.13-alpine3.19
- vulnerabilities

Environment Variables (4 changes)

> * `±` 4 changed > * _6 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin -PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 +PYTHON_GET_PIP_SHA256=dfe9fd5c28dc98b5ac17979a953ea550cec37ae1b47a5116007395bfacff2ab9 -PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py +PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/dbf0c85f76fb6e1ab42aa672ffca6f0a675d9ee4/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=10d466d8664e1e926b8707e1d6d78c91bfe6a638 -VERSION=edge +VERSION=pr-518 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-02-17T00:50:20.797Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=10d466d8664e1e926b8707e1d6d78c91bfe6a638 org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-518 ```

Packages and Vulnerabilities (8 package changes and 5 vulnerability changes)

> * :infinity: 8 packages changed > * 102 packages unchanged > * :heavy_check_mark: 5 vulnerabilities removed

Changes for packages of type apk (6 changes)

	Package	Version psisharedsharedchncr001.azurecr.io/alphafold:edge	Version psisharedsharedchncr001.azurecr.io/alphafold:pr-518
:infinity:	.python-rundeps	20231209.013648	20240127.073042
:infinity:	libcrypto3	3.1.4-r2	3.1.4-r5
:infinity:	libssl3	3.1.4-r2	3.1.4-r5
:infinity:	openssl	3.1.4-r2	3.1.4-r5
		Removed vulnerabilities (3):
:infinity:	tzdata	2023c-r1	2023d-r0
:infinity:	zlib	1.3-r2	1.3.1-r0

Changes for packages of type pypi (2 changes)

	Package	Version psisharedsharedchncr001.azurecr.io/alphafold:edge	Version psisharedsharedchncr001.azurecr.io/alphafold:pr-518
:infinity:	cryptography	41.0.7	42.0.2
		Removed vulnerabilities (2):
:infinity:	pip	23.3.2	24.0

[dependabot[bot]]

Superseded by #523.