Bump pytest from 7.4.4 to 8.0.1 in /backend

dependabot[bot] commented 9 months ago

Bumps pytest from 7.4.4 to 8.0.1.

Release notes

8.0.1

pytest 8.0.1 (2024-02-16)

Bug Fixes

#11875: Correctly handle errors from getpass.getuser{.interpreted-text role="func"} in Python 3.13.

#11879: Fix an edge case where ExceptionInfo._stringify_exception could crash pytest.raises{.interpreted-text role="func"}.

#11906: Fix regression with pytest.warns{.interpreted-text role="func"} using custom warning subclasses which have more than one parameter in their [__init__]{.title-ref}.

#11907: Fix a regression in pytest 8.0.0 whereby calling pytest.skip{.interpreted-text role="func"} and similar control-flow exceptions within a pytest.warns(){.interpreted-text role="func"} block would get suppressed instead of propagating.

#11929: Fix a regression in pytest 8.0.0 whereby autouse fixtures defined in a module get ignored by the doctests in the module.

#11937: Fix a regression in pytest 8.0.0 whereby items would be collected in reverse order in some circumstances.

pytest 8.0.0 (2024-01-27)

See 8.0.0rc1 and 8.0.0rc2 for the full changes since pytest 7.4!

Bug Fixes

#11842: Properly escape the reason of a skip <pytest.mark.skip ref>{.interpreted-text role="ref"} mark when writing JUnit XML files.

#11861: Avoid microsecond exceeds 1_000_000 when using log-date-format with %f specifier, which might cause the test suite to crash.

8.0.0rc2

pytest 8.0.0rc2 (2024-01-17)

Improvements

#11233: Improvements to -r for xfailures and xpasses:

Report tracebacks for xfailures when -rx is set.

Report captured output for xpasses when -rX is set.

For xpasses, add - in summary between test name and reason, to match how xfail is displayed.

#11825: The pytest_plugin_registered{.interpreted-text role="hook"} hook has a new plugin_name parameter containing the name by which plugin is registered.

Bug Fixes

#11706: Fix reporting of teardown errors in higher-scoped fixtures when using [--maxfail]{.title-ref} or [--stepwise]{.title-ref}.

#11758: Fixed IndexError: string index out of range crash in if highlighted[-1] == "\n" and source[-1] != "\n". This bug was introduced in pytest 8.0.0rc1.

#9765, #11816: Fixed a frustrating bug that afflicted some users with the only error being assert mod not in mods. The issue was caused by the fact that str(Path(mod)) and mod.__file__ don't necessarily produce the same string, and was being erroneously used interchangably in some places in the code.

This fix also broke the internal API of PytestPluginManager.consider_conftest by introducing a new parameter -- we mention this in case it is being used by external code, even if marked as private.

pytest 8.0.0rc1 (2023-12-30)

See https://docs.pytest.org/en/latest/changelog.html#pytest-8-0-0rc1-2023-12-30 for the rendered changelog.

... (truncated)

Commits

d7d320a Prepare release version 8.0.1
9369916 Merge pull request #11992 from bluetech/backport-11991
a232abd [8.0.x] recwarn: fix pytest.warns handling of Warnings with multiple arguments
92203d2 Merge pull request #11990 from bluetech/backport-11920
f1aa922 [8.0.x] recwarn: let base exceptions propagate through pytest.warns again
d86d081 [8.0.x] Added logot to the plugin list (#11977)
c554c3d Merge pull request #11968 from pytest-dev/backport-11957-to-8.0.x
a6851e3 [8.0.x] main: fix reversed collection order in Session
e6f6be3 [8.0.x] Improve error message when using @pytest.fixture twice (#11958)
23b91d1 [8.0.x] Merge pull request #11941 from bluetech/doctest-parsefactories (#11948)
Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

codecov[bot] commented 9 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (de3ef77) 100.00% compared to head (fa00dba) 100.00%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #520 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/520/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/520/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

github-actions[bot] commented 9 months ago

Overview

Image reference	`psisharedsharedchncr001.azurecr.io/alphafold:edge`	`psisharedsharedchncr001.azurecr.io/alphafold:pr-520`
- digest	`35cc0232bf90`	`dab70661b573`
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/fa00dba036b703c864f2477e7b73a783c3ea8c4a
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	67 MB (+8.4 MB)
- packages	110	110
Base Image	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`
- vulnerabilities

Environment Variables (4 changes)

> * `±` 4 changed > * _6 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin -PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 +PYTHON_GET_PIP_SHA256=dfe9fd5c28dc98b5ac17979a953ea550cec37ae1b47a5116007395bfacff2ab9 -PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py +PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/dbf0c85f76fb6e1ab42aa672ffca6f0a675d9ee4/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=fa00dba036b703c864f2477e7b73a783c3ea8c4a -VERSION=edge +VERSION=pr-520 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-02-19T14:45:36.934Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=fa00dba036b703c864f2477e7b73a783c3ea8c4a org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-520 ```

Packages and Vulnerabilities (7 package changes and 2 vulnerability changes)

> * :infinity: 7 packages changed > * 103 packages unchanged > * :heavy_check_mark: 2 vulnerabilities removed

Changes for packages of type apk (6 changes)

	Package	Version `psisharedsharedchncr001.azurecr.io/alphafold:edge`	Version `psisharedsharedchncr001.azurecr.io/alphafold:pr-520`
:infinity:	.python-rundeps	`20231209.013648`	`20240127.073042`
:infinity:	libcrypto3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	libssl3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	openssl	`3.1.4-r2`	`3.1.4-r5`

		Removed vulnerabilities (3):
:infinity:	tzdata	`2023c-r1`	`2023d-r0`
:infinity:	zlib	`1.3-r2`	`1.3.1-r0`