Bump pytest from 7.4.4 to 8.1.1 in /backend

dependabot[bot] commented 8 months ago

Bumps pytest from 7.4.4 to 8.1.1.

Release notes

8.1.1

pytest 8.1.1 (2024-03-08)

::: {.note} ::: {.title} Note :::

This release is not a usual bug fix release -- it contains features and improvements, being a follow up to 8.1.0, which has been yanked from PyPI. :::

Features

#11475: Added the new consider_namespace_packages{.interpreted-text role="confval"} configuration option, defaulting to False.

If set to True, pytest will attempt to identify modules that are part of namespace packages when importing modules.

#11653: Added the new verbosity_test_cases{.interpreted-text role="confval"} configuration option for fine-grained control of test execution verbosity. See Fine-grained verbosity <pytest.fine_grained_verbosity>{.interpreted-text role="ref"} for more details.

Improvements

#10865: pytest.warns{.interpreted-text role="func"} now validates that warnings.warn{.interpreted-text role="func"} was called with a [str]{.title-ref} or a [Warning]{.title-ref}. Currently in Python it is possible to use other types, however this causes an exception when warnings.filterwarnings{.interpreted-text role="func"} is used to filter those warnings (see [CPython #103577](python/cpython#103577) for a discussion). While this can be considered a bug in CPython, we decided to put guards in pytest as the error message produced without this check in place is confusing.

#11311: When using --override-ini for paths in invocations without a configuration file defined, the current working directory is used as the relative directory.

Previoulsy this would raise an AssertionError{.interpreted-text role="class"}.

#11475: --import-mode=importlib <import-mode-importlib>{.interpreted-text role="ref"} now tries to import modules using the standard import mechanism (but still without changing :pysys.path{.interpreted-text role="data"}), falling back to importing modules directly only if that fails.

This means that installed packages will be imported under their canonical name if possible first, for example app.core.models, instead of having the module name always be derived from their path (for example .env310.lib.site_packages.app.core.models).

#11801: Added the iter_parents() <_pytest.nodes.Node.iter_parents>{.interpreted-text role="func"} helper method on nodes. It is similar to listchain <_pytest.nodes.Node.listchain>{.interpreted-text role="func"}, but goes from bottom to top, and returns an iterator, not a list.

#11850: Added support for sys.last_exc{.interpreted-text role="data"} for post-mortem debugging on Python>=3.12.

#11962: In case no other suitable candidates for configuration file are found, a pyproject.toml (even without a [tool.pytest.ini_options] table) will be considered as the configuration file and define the rootdir.

#11978: Add --log-file-mode option to the logging plugin, enabling appending to log-files. This option accepts either "w" or "a" and defaults to "w".

Previously, the mode was hard-coded to be "w" which truncates the file before logging.

... (truncated)

Commits

81653ee Adjust changelog manually for 8.1.1
e60b4b9 Prepare release version 8.1.1
15fbe57 [8.1.x] Revert legacy path removals (#12093)
86c3aab [8.1.x] Do not import duplicated modules with --importmode=importlib (#12077)
5b82b0c [8.1.x] Yank version 8.1.0 (#12076)
0a53681 Merge pull request #12054 from pytest-dev/release-8.1.0
b9a167f Prepare release version 8.1.0
00043f7 Merge pull request #12038 from bluetech/fixtures-rm-arg2index
f4e1025 Merge pull request #12048 from bluetech/fixture-teardown-excgroup
43492f5 Merge pull request #12051 from jakkdl/test_debugging_pythonbreakpoint
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codecov[bot] commented 8 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 100.00%. Comparing base (de3ef77) to head (e7f850b).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #535 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/535/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/535/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

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github-actions[bot] commented 8 months ago

Overview

Image reference	`psisharedsharedchncr001.azurecr.io/alphafold:edge`	`psisharedsharedchncr001.azurecr.io/alphafold:pr-535`
- digest	`35cc0232bf90`	`edfa18f3ee70`
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/e7f850b735ec7bdd7abde26f44b1bbad31397417
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	67 MB (+8.4 MB)
- packages	110	110
Base Image	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`
- vulnerabilities

Environment Variables (4 changes)

> * `±` 4 changed > * _6 unchanged_ ```diff GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin -PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 +PYTHON_GET_PIP_SHA256=dfe9fd5c28dc98b5ac17979a953ea550cec37ae1b47a5116007395bfacff2ab9 -PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py +PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/dbf0c85f76fb6e1ab42aa672ffca6f0a675d9ee4/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_VERSION=3.10.13 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=e7f850b735ec7bdd7abde26f44b1bbad31397417 -VERSION=edge +VERSION=pr-535 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-03-11T14:29:54.941Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=e7f850b735ec7bdd7abde26f44b1bbad31397417 org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-535 ```

Packages and Vulnerabilities (7 package changes and 2 vulnerability changes)

> * :infinity: 7 packages changed > * 103 packages unchanged > * :heavy_check_mark: 2 vulnerabilities removed

Changes for packages of type apk (6 changes)

	Package	Version `psisharedsharedchncr001.azurecr.io/alphafold:edge`	Version `psisharedsharedchncr001.azurecr.io/alphafold:pr-535`
:infinity:	.python-rundeps	`20231209.013648`	`20240127.073042`
:infinity:	libcrypto3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	libssl3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	openssl	`3.1.4-r2`	`3.1.4-r5`

		Removed vulnerabilities (3):
:infinity:	tzdata	`2023c-r1`	`2023d-r0`
:infinity:	zlib	`1.3-r2`	`1.3.1-r0`