Bump ruff from 0.1.14 to 0.3.4 in /backend

dependabot[bot] commented 8 months ago

Bumps ruff from 0.1.14 to 0.3.4.

Release notes

v0.3.3

Changes

Preview features

[flake8-bandit]: Implement S610 rule (#10316)

[pycodestyle] Implement blank-line-at-end-of-file (W391) (#10243)

[pycodestyle] Implement redundant-backslash (E502) (#10292)

[pylint] - implement redeclared-assigned-name (W0128) (#9268)

Rule changes

[flake8_comprehensions] Handled special case for C400 which also matches C416 (#10419)

[flake8-bandit] Implement upstream updates for S311, S324 and S605 (#10313)

[pyflakes] Remove F401 fix for __init__ imports by default and allow opt-in to unsafe fix (#10365)

[pylint] Implement invalid-bool-return-type (E304) (#10377)

[pylint] Include builtin warnings in useless-exception-statement (PLW0133) (#10394)

CLI

Add message on success to ruff check (#8631)

Bug fixes

[PIE970] Allow trailing ellipsis in typing.TYPE_CHECKING (#10413)

Avoid TRIO115 if the argument is a variable (#10376)

[F811] Avoid removing shadowed imports that point to different symbols (#10387)

Fix F821 and F822 false positives in .pyi files (#10341)

Fix F821 false negatives in .py files when from __future__ import annotations is active (#10362)

Fix case where Indexer fails to identify continuation preceded by newline #10351 (#10354)

Sort hash maps in Settings display (#10370)

Track conditional deletions in the semantic model (#10415)

[C413] Wrap expressions in parentheses when negating (#10346)

[pycodestyle] Do not ignore lines before the first logical line in blank lines rules. (#10382)

[pycodestyle] Do not trigger E225 and E275 when the next token is a ')' (#10315)

[pylint] Avoid false-positive slot non-assignment for __dict__ (PLE0237) (#10348)

Gate f-string struct size test for Rustc < 1.76 (#10371)

Documentation

Use ruff.toml format in README (#10393)

[RUF008] Make it clearer that a mutable default in a dataclass is only valid if it is typed as a ClassVar (#10395)

[pylint] Extend docs and test in invalid-str-return-type (E307) (#10400)

Remove . from check and format commands (#10217)

Contributors

@AlexWaygood

@Guilherme-Vasconcelos

@KotlinIsland

@anuraaga

... (truncated)

Changelog

Sourced from ruff's changelog.

0.3.4

Preview features

[flake8-simplify] Detect implicit else cases in needless-bool (SIM103) (#10414)

[pylint] Implement nan-comparison (PLW0117) (#10401)

[pylint] Implement nonlocal-and-global (E115) (#10407)

[pylint] Implement singledispatchmethod-function (PLE5120) (#10428)

[refurb] Implement list-reverse-copy (FURB187) (#10212)

Rule changes

[flake8-pytest-style] Add automatic fix for pytest-parametrize-values-wrong-type (PT007) (#10461)

[pycodestyle] Allow SPDX license headers to exceed the line length (E501) (#10481)

Formatter

Fix unstable formatting for trailing subscript end-of-line comment (#10492)

Bug fixes

Avoid code comment detection in PEP 723 script tags (#10464)

Avoid incorrect tuple transformation in single-element case (C409) (#10491)

Bug fix: Prevent fully defined links name from being reformatted (#10442)

Consider raw source code for W605 (#10480)

Docs: Link inline settings when not part of options section (#10499)

Don't treat annotations as redefinitions in .pyi files (#10512)

Fix E231 bug: Inconsistent catch compared to pycodestyle, such as when dict nested in list (#10469)

Fix pylint upstream categories not showing in docs (#10441)

Add missing Options references to blank line docs (#10498)

'Revert "F821: Fix false negatives in .py files when from __future__ import annotations is active (#10362)"' (#10513)

Apply NFKC normalization to unicode identifiers in the lexer (#10412)

Avoid failures due to non-deterministic binding ordering (#10478)

[flake8-bugbear] Allow tuples of exceptions (B030) (#10437)

[flake8-quotes] Avoid syntax errors due to invalid quotes (Q000, Q002) (#10199)

0.3.3

Preview features

[flake8-bandit]: Implement S610 rule (#10316)

[pycodestyle] Implement blank-line-at-end-of-file (W391) (#10243)

[pycodestyle] Implement redundant-backslash (E502) (#10292)

[pylint] - implement redeclared-assigned-name (W0128) (#9268)

Rule changes

[flake8_comprehensions] Handled special case for C400 which also matches C416 (#10419)

[flake8-bandit] Implement upstream updates for S311, S324 and S605 (#10313)

[pyflakes] Remove F401 fix for __init__ imports by default and allow opt-in to unsafe fix (#10365)

... (truncated)

Commits

5062572 Bump version to v0.3.4 (#10515)
dc6f639 Rename list-reassign-reversed to list-reverse-copy (#10514)
01fe268 [refurb] Implement list_assign_reversed lint (FURB187) (#10212)
c62184d 'Revert "F821: Fix false negatives in .py files when `from future import ...
9b3c732 Docs: Link inline settings when not part of options section (#10499)
caa1450 Don't treat annotations as redefinitions in .pyi files (#10512)
60fd98e Update Rust to v1.77 (#10510)
ac150b9 Spruce up docs for flake8-pyi rules (part 2) (#10494)
d9ac170 Fix E231 bug: Inconsistent catch compared to pycodestyle, such as when dict...
c5ea420 chore: remove repetitive words (#10502)
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codecov[bot] commented 8 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 100.00%. Comparing base (de3ef77) to head (c4f3779).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #544 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 7 7 Lines 105 105 ========================================= Hits 105 105 ``` | [Flag](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/544/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | Coverage Δ | | |---|---|---| | [backend](https://app.codecov.io/gh/paulscherrerinstitute/alphafold-on-fire/pull/544/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=paulscherrerinstitute#carryforward-flags-in-the-pull-request-comment) to find out more.

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github-actions[bot] commented 8 months ago

Overview

Image reference	`psisharedsharedchncr001.azurecr.io/alphafold:edge`	`psisharedsharedchncr001.azurecr.io/alphafold:pr-544`
- digest	`35cc0232bf90`	`3e5ad40748e3`
- provenance	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/de3ef7709d4a18edecd940fd654063e7e3e5b6a6	https://github.com/paulscherrerinstitute/alphafold-on-fire/commit/c4f37793eef758041620ee4209acc0836cffc1fe
- vulnerabilities
- platform	linux/amd64	linux/amd64
- size	59 MB	67 MB (+8.4 MB)
- packages	110	110
Base Image	`python:3.10-alpine` also known as: • `3.10-alpine3.19` • `3.10.13-alpine` • `3.10.13-alpine3.19`	`python:3.10-alpine` also known as: • `3.10-alpine3.19`
- vulnerabilities

Environment Variables (6 changes)

> * `±` 6 changed > * _4 unchanged_ ```diff -GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D +GPG_KEY=E3FF2839C048B25C084DEBE9B26995E310250568 LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin -PYTHON_GET_PIP_SHA256=7cfd4bdc4d475ea971f1c0710a5953bcc704d171f83c797b9529d9974502fcc6 +PYTHON_GET_PIP_SHA256=dfe9fd5c28dc98b5ac17979a953ea550cec37ae1b47a5116007395bfacff2ab9 -PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/049c52c665e8c5fd1751f942316e0a5c777d304f/public/get-pip.py +PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/dbf0c85f76fb6e1ab42aa672ffca6f0a675d9ee4/public/get-pip.py PYTHON_PIP_VERSION=23.0.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 -PYTHON_VERSION=3.10.13 +PYTHON_VERSION=3.10.14 -RELEASE_ID=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +RELEASE_ID=c4f37793eef758041620ee4209acc0836cffc1fe -VERSION=edge +VERSION=pr-544 ```

Labels (3 changes)

> * `±` 3 changed > * _5 unchanged_ ```diff -org.opencontainers.image.created=2024-01-25T08:16:19.691Z +org.opencontainers.image.created=2024-03-22T14:44:21.032Z org.opencontainers.image.description= org.opencontainers.image.licenses=GPL-3.0 -org.opencontainers.image.revision=de3ef7709d4a18edecd940fd654063e7e3e5b6a6 +org.opencontainers.image.revision=c4f37793eef758041620ee4209acc0836cffc1fe org.opencontainers.image.source=https://github.com/paulscherrerinstitute/alphafold-on-fire org.opencontainers.image.title=alphafold-on-fire org.opencontainers.image.url=https://github.com/paulscherrerinstitute/alphafold-on-fire -org.opencontainers.image.version=edge +org.opencontainers.image.version=pr-544 ```

Packages and Vulnerabilities (11 package changes and 5 vulnerability changes)

> * :infinity: 11 packages changed > * 99 packages unchanged > * :heavy_check_mark: 5 vulnerabilities removed

Changes for packages of type apk (8 changes)

	Package	Version `psisharedsharedchncr001.azurecr.io/alphafold:edge`	Version `psisharedsharedchncr001.azurecr.io/alphafold:pr-544`
:infinity:	.python-rundeps	`20231209.013648`	`20240320.202744`
:infinity:	expat	`2.5.0-r2`	`2.6.2-r0`

		Removed vulnerabilities (3):
:infinity:	libcrypto3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	libexpat	`2.5.0-r2`	`2.6.2-r0`
:infinity:	libssl3	`3.1.4-r2`	`3.1.4-r5`
:infinity:	openssl	`3.1.4-r2`	`3.1.4-r5`

		Removed vulnerabilities (3):
:infinity:	tzdata	`2023c-r1`	`2024a-r0`
:infinity:	zlib	`1.3-r2`	`1.3.1-r0`