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paulscherrerinstitute / ch.psi.imagej.hdf5

ImageJ HDF5 Plugin
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no such method error #6

Open kematusik opened 3 years ago

kematusik commented 3 years ago

I am using ImageJ version 1.53f and Java 1.8.0_112 (64-bit) with Ubuntu 16.04 LTS. When I copy the HDF5_Viewer-0.13.0.jar file into ImageJ/plugins folder, restart ImageJ, and try to load an HDF file, I get the following error:

ImageJ 1.53f; Java 1.8.0_112 [64-bit]; Linux 4.15.0-122-generic; 95MB of 100000MB (<1%) java.lang.NoSuchMethodError: org.slf4j.Logger.trace(Ljava/lang/String;Ljava/lang/Object;Ljava/lang/Object;)V at hdf.object.FileFormat.(FileFormat.java:315) at hdf.object.h5.H5File.(H5File.java:174) at hdf.object.h5.H5File.(H5File.java:127) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at hdf.object.FileFormat.(FileFormat.java:228) at ch.psi.imagej.hdf5.HDF5Reader.open(HDF5Reader.java:82) at ch.psi.imagej.hdf5.HDF5Reader.open(HDF5Reader.java:51) at ch.psi.imagej.hdf5.HDF5Reader.run(HDF5Reader.java:36) at ij.IJ.runUserPlugIn(IJ.java:241) at ij.IJ.runPlugIn(IJ.java:204) at ij.Executer.runCommand(Executer.java:150) at ij.Executer.run(Executer.java:68) at java.lang.Thread.run(Thread.java:745)

These files work with HDF5_Vibez, so I know it isn't a corrupt file issue. I also removed the HDF5_Vibez.jar file from the plugins folder.

simongregorebner commented 3 years ago

Hmmm.... I guess the latest jar was build with Java 11 and the Readme was not updated by me. I need to check. Maybe, in the meantime, could you try to run ImageJ with a java >=11 ?