Update fetch_data workflow and downloads.tsv

paulsengroup / 2022-mcf10a-cancer-progression

Data analysis code for: "Loss of multi-level 3D genome organization during breast cancer progression" (preprint available soon)

MIT License

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Closed robomics closed 1 year ago

robomics commented 1 year ago

Remove input files for GRCh38
Download hg38 chrom.sizes and chrom_alias.txt from UCSC
Update preprocessing workflow to remove unused processes and generate a list of blacklisted regions for later use