Open robomics opened 3 weeks ago
Instead of depending on hictkpy, I think it would be better to write a thin-wrapper for cooler using pybind11 and write the test suite in C++.
cooler
The only annoyance with this approach, is that we need to resort to multi-processing to run queries in parallel...
While we are at it, it would be good to also include tests for the various transformers::*.
transformers::*
Instead of depending on hictkpy, I think it would be better to write a thin-wrapper for
coolerusing pybind11 and write the test suite in C++.The only annoyance with this approach, is that we need to resort to multi-processing to run queries in parallel...
While we are at it, it would be good to also include tests for the various
transformers::*.