paulsengroup hictkpy issues

paulsengroup / hictkpy

Python bindings for hictk: read and write .cool and .hic files directly from Python

MIT License

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issues

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Pin manylinux image to avoid invalidating CI build cache too frequently

#120 robomics closed 5 hours ago
0
Use the latest manylinux_2_28 image available

#119 robomics closed 21 hours ago
0
Annotate functions with nb::rv_policy to avoid unnecessary copies

#118 robomics opened 1 day ago
0
Remove dead code

#117 robomics closed 2 hours ago
0
Fix typo in cooler.FileWriter class

#116 robomics closed 1 hour ago
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Improve error message generated when invalid params are passed to hictkpy.File()

#115 robomics closed 50 minutes ago
0
Return balancing weights as numpy arrays

#114 robomics closed 6 hours ago
0
Support Python 3.13

#113 robomics closed 1 week ago
0
[feature] make API more user-friendly

#112 robomics opened 2 weeks ago
0
[feature] improve error messages when opening .mcools with File() without specifying a resolution

#111 robomics closed 50 minutes ago
0
[feature] return weights as np.array

#110 robomics closed 6 hours ago
0
Fix typos in the README

#109 robomics closed 2 weeks ago
0
Debugging

#108 robomics closed 2 weeks ago
0
Debugging

#107 robomics closed 2 weeks ago
0
[feature] Improve handling of NaNs when calling sum() and nnz() on PixelSelectors

#106 robomics opened 2 weeks ago
0
Prepare for release

#105 robomics closed 2 weeks ago
0
Bump hictk to v2.0.1

#104 robomics closed 2 weeks ago
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Fix CI

#103 robomics closed 2 weeks ago
0
Skip test_bin_table.py::TestClass::test_to_df when test deps are missing

#102 robomics closed 2 weeks ago
0
[pre-commit.ci] pre-commit autoupdate

#101 pre-commit-ci[bot] opened 2 weeks ago
0
Add jobs to publish releases/wheels to (Test) PyPI

#100 robomics closed 2 weeks ago
0
Test hictkpy against Python 3.13

#99 robomics closed 2 weeks ago
0
Use the Arrow C and PyCapsule data interfaces to share data with Python

#98 robomics closed 2 weeks ago
0
Test if _DISABLE_CONSTEXPR_MUTEX_CONSTRUCTOR fixes segfaults on MSVC

#97 robomics closed 3 weeks ago
1
Fix stubgen

#96 robomics closed 3 weeks ago
0
Undef SPDLOG_ACTIVE_LEVEL=SPDLOG_LEVEL_OFF when compiling on Windows

#95 robomics closed 3 weeks ago
0
Pin pyarrow version and detect ABI incompatibilities at runtime

#94 robomics closed 3 weeks ago
0
Re-enable logging on Windows

#93 robomics closed 3 weeks ago
0
Update the docs

#92 robomics closed 2 weeks ago
0
[packaging] Support multiple versions of pyarrow

#91 robomics closed 2 weeks ago
0
Make pandas and scipy optional deps

#90 robomics closed 3 weeks ago
0
Optimize CI

#89 robomics closed 3 weeks ago
0
Support interfacing spdlog with Python's logging stdlib

#88 robomics closed 3 weeks ago
0
Refuse to add pixels to files that have already been finalized

#87 robomics closed 3 weeks ago
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Ensure FileWriter objects always use uniquely named folders for temporary file IO

#86 robomics closed 3 weeks ago
0
Make the public API more Pythonic

#85 robomics closed 3 weeks ago
0
Build wheels for Python 3.13

#84 robomics closed 1 week ago
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Refactor

#83 robomics closed 3 weeks ago
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Explicitly link to std::filesystem

#82 robomics closed 3 weeks ago
0
Update CI workflows

#81 robomics closed 3 weeks ago
2
Maintenance

#80 robomics closed 3 weeks ago
0
Segfault when compiling using very recent versions of MSVC

#79 robomics opened 3 weeks ago
0
Bump nanobind. Port to what will be hictk v2.0.0 in the near future

#78 robomics closed 3 weeks ago
1
[packaging] Make dependencies optional where it makes sense

#77 robomics closed 3 weeks ago
0
Bump pypa/cibuildwheel from 2.20 to 2.21

#76 dependabot[bot] closed 1 month ago
0
[feature] support fetching pixels spanning the lower-triangular matrix

#75 robomics closed 3 weeks ago
1
Implement fuzzer

#74 robomics closed 3 weeks ago
1
`htk.fetch().to_numpy()` sometimes gives incorrect result when two regions don't overlap

#73 i-pletenev closed 2 weeks ago
3
`htk.fetch().to_numpy()` gives incorrect result when two regions overlap

#72 i-pletenev closed 2 weeks ago
1
Error while plotting interactions using matplotlib 3.9.2

#71 obikenobi23 closed 2 months ago
4