Skip 'splitting the reference genome sequence' stage if it has already been split

paulstothard / cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

https://paulstothard.github.io/cgview_comparison_tool/

GNU General Public License v3.0

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Skip 'splitting the reference genome sequence' stage if it has already been split #2

Open kim-fehl opened 3 years ago

kim-fehl commented 3 years ago

Seems that this stage could be skipped if already done during previous runs, especially considering that it is using only one CPU and is somewhat slow.

Splitting the reference genome sequence in NZ_CP009909/cct_projects/dna_vs_dna/reference_genome for BLAST searches.

kim-fehl commented 3 years ago

After downloading gb file manually from ncbi long preprocessing issue disappeared.