BLAST usage errors as of BLAST+ 2.10

paulstothard / cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

https://paulstothard.github.io/cgview_comparison_tool/

GNU General Public License v3.0

30 stars 18 forks source link

BLAST usage errors as of BLAST+ 2.10 #5

Closed tillea closed 3 years ago

tillea commented 4 years ago

Hi, please consider to apply this patch that was tested for Debian with the latest version of BLAST. Kind regards, Andreas.

naphtap commented 3 years ago

Hello, In which command would I apply the patch?

Thank you

tillea commented 3 years ago

Just do

patch -p1 < patchfile

paulstothard commented 3 years ago

Thank you for the patch. I've modified the relevant script so that the legacy blastall command's -Q and -D flags are only supplied to BLAST variants that involve translating queries and subjects respectively.