genome with plasmids vs genome with plasmids

[dikshyantg]

One of my genome with plasmids with extension .gb ran through docker gave accurate representation of size another one I downloaded from NCBI which had a genome with around 6503724 bp and 9 other plasmids with different sizes. When I draw a map of this later genome I only get map of 6503724 bp , without addition of 9 other plasmids. They are all in one single files. The file was too big so I took a snapshot for the image. The gbk file has been uploaded by converting it to text as gbk format is not supported NC_009925.1.txt

[paulstothard]

The program considers the plasmids distinct natural molecules and so you would need to process each individually as a separate reference genome.