Warning message from pynndescent

[ivan-marroquin]

Hi,

Many thanks for such good package!

I am using pynndescent 0.5.2 and opentsne 0.6.0, when I use these commands:

affinities_multiscale= openTSNE.affinity.Multiscale(input_data, perplexities= [120, 60], method= 'pynndescent', metric= 'minkowski', metric_params= {'p': 0.3}, n_jobs= cpu_count, random_state= 1969)

embedding= openTSNE.TSNE(n_components= intrinsic_dim, perplexity= 120, learning_rate= 'auto', early_exaggeration_iter= 100, early_exaggeration= 22, n_iter= 350, theta= 0.5, initialization= 'random', neighbors= 'pynndescent', metric= 'minkowski', metric_params= {'p': 0.3}, initial_momentum= 0.5, negative_gradient_method= 'bh', n_jobs= cpu_count, random_state= 1969)

projected_data= embedding.fit(input_data, affinities= affinities_multiscale)

I get the following warning message: c:\temp\python\python3.6.5\lib\site-packages\openTSNE\nearest_neighbors.py:452: UserWarning: pynndescent has recently changed which distance metrics are supported, and openTSNE.nearest_neighbors has not been updated. Please notify the developers of this change. "pynndescent has recently changed which distance metrics are supported, "

Ivan

[pavlin-policar]

Thanks for reporting this!

[ivan-marroquin]

Hi @pavlin-policar ,

I would like to inform you that the warning message is still present with open TSNE 0.6.2 and pynndescent 0.5.6

Hope this helps,

Ivan

[pavlin-policar]

Thanks for letting me know! I'll get on it ASAP.