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payu-org / payu

A workflow management tool for numerical models on the NCI computing systems
Apache License 2.0
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payu collate not collating restart although restart: true in config.yaml 1deg_jra55_iaf #320

Closed hakaseh closed 2 years ago

hakaseh commented 2 years ago

I read https://github.com/payu-org/payu/issues/275 and understand that the latest ACCESS-OM2 control /experiment should collate restart files automatically with restart: true in config.yaml. But I can't collate restart files in my directory: /scratch/v45/hh0162/access-om2-cycle4/control/1deg_jra55_iamip2_his

I'd like to collate restart files in archive/restart000. I have tried both payu collate and payu collate -d restart000 but no success so far. There were no error messages for these jobs:

Moving log 1deg_jra55_ia_c.o31579143
Moving log 1deg_jra55_ia_c.e31579143
Moving log 1deg_jra55_ia_c.e31578932
Moving log 1deg_jra55_ia_c.o31578932

Could you please take a look?

aidanheerdegen commented 2 years ago

Sounds like a duplicate of #316

Can you try the latest version in conda/analysis3-unstable and see if that fixes your issue.

hakaseh commented 2 years ago

ahh yes, that fixed the issue! thanks @aidanheerdegen

hakaseh commented 2 years ago

@aidanheerdegen where should I define module load conda/analysis3-unstable? I defined it in my ~/.bash_profile but my test run today indicates it was not used (i.e. the collation of restart files did not happen automatically).

aidanheerdegen commented 2 years ago

You can find which version of payu you're using with

which payu

Maybe also check if you have a version of payu installed locally in ~/.local.

If none of that helps msg me on slack with details about your control directory and where it isn't working for you.

hakaseh commented 2 years ago

which payu gives /g/data3/hh5/public/apps/miniconda3/envs/analysis3-21.10/bin/payu

no payu is installed in ~/.local.

i'll message you on slack.