search

pbl007 / PBLabToolkit

0 stars 1 forks source link

Missing items in main_CalciumPipeline #1

Closed AmosG8 closed 7 years ago

AmosG8 commented 7 years ago

Main unsolved issues with the current pipeline:

  1. Requires all loaded files to be of the same FOV.
  2. Loading StimVector and SpeedVector into the EP_FILES struct (in getDataFromDir).
  3. In AG_slice_EP_variables: Currently the code assumes that we have 1000 Stim samples per frame. After checking it appears that it samples 1000 times per second.
  4. Make sure that the time that passes between subsequent stimuli is indeed at least 15 secs and change the way it marks the ResponseWindow.
  5. Classify frames to run and stand frames (lines 70-80) in AG_slice_EP_variables.
HagaiHargil commented 7 years ago

For now, we still have no idea if the higher spikes are the true stimuli, or if the lower ones are. This will become important pretty soon. :)

The rest of the things in this issue are done.