Unable to understand the result

[tanwei123456]

Dear author, I've had some success using the software to run my data, but I'm a little confused about the results。

/gss1/home/gaozhh01/.local/bin/run_hyde.py -i data.txt -m map.txt -o out -n 136 -t 8 -s 689778 --prefix data.txt

 The results are as follows:

  Can this result be interpreted to mean that the species of zhx is a hybrid,  and  the zhx population has ∼90% of its genetic material inherited from population ying.
 I am looking forward to your reply. Thank you!

[pblischak]

I think there is definitely some admixture going on but it is hard to say that zhx is a hybrid, in the sense of hybrid speciation, because it shows up in other tests as a having admixed material from other species as well. Depending on the underlying tree topology, this might be a case of older hybridization. I think running something like Dsuite could be helpful to tease things apart more, or if you want to estimate an actual network, PhyloNetworks would be good to try as well

[tanwei123456]

Thank you very much for your reply, which helps me a lot ?? @.***

 

------------------ 原始邮件 ------------------ 发件人: "pblischak/HyDe" @.>; 发送时间: 2023年4月13日(星期四) 上午6:19 @.>; @.**@.>; 主题: Re: [pblischak/HyDe] Unable to understand the result (Issue #30)

I think there is definitely some admixture going on but it is hard to say that zhx is a hybrid, in the sense of hybrid speciation, because it shows up in other tests as a having admixed material from other species as well. Depending on the underlying tree topology, this might be a case of older hybridization. I think running something like Dsuite could be helpful to tease things apart more, or if you want to estimate an actual network, PhyloNetworks would be good to try as well

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

[pblischak]

You're welcome! I'm going to close the issue for now but please let me know if you have any other questions