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pbs-assess / csasdown

:book: An R package for creating CSAS reports in PDF or Word format with R Markdown and bookdown
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Error knitting herring Science Response #241

Closed grinnellm closed 1 year ago

grinnellm commented 1 year ago

I get an error knitting the herring science response. I could be wrong but this might have to do with the recent commits regarding pandoc, and the fact that we are running older versions of R and RStudio?

If I knit the SR

bookdown::render_book("index.Rmd")

it fails with

Error in grep("^% START-PANDOC-3.1.8", csas_style) : object 'csas_style' not found

For now I can get around this by installing an older version of csasdown (Sept 27, 2023):

devtools::install_github("pbs-assess/csasdown@92f7f6429fd0844f1f952a2e2b26b03f738e2dd9")

and then it knits as expected.

We have to use older 32-bit R and RStudio versions to connect with 32-bit MS Access, so Pandoc is older too:

rmarkdown::pandoc_version() [1] ‘1.19.2.1’ R.version.string [1] "R version 4.1.3 (2022-03-10)"

And RStudio Version 1.1.463 – © 2009-2018 RStudio, Inc.

If it's not obvious what the problem is, I will make a small reproducible example and post it here soon.

seananderson commented 1 year ago

Huh, same as this: https://github.com/pbs-assess/csasdown/issues/240

I doubt that's from pandoc... it sounds like it can't find the 'csas_style' folder in the installed package data, although I have no idea what's changed around that. I'll look through the commit history.

seananderson commented 1 year ago

Ah, I think I see the bug.

grinnellm commented 1 year ago

I'm working on a small example to reproduce, would that help?

seananderson commented 1 year ago

Nope, I see the issue.

seananderson commented 1 year ago

Check if it's fixed now.

grinnellm commented 1 year ago

Amazing service, thanks Sean:) That did it.. works just fine now.