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pcarbo / varbvs

Large-scale Bayesian variable selection for R and MATLAB.
http://pcarbo.github.io/varbvs
GNU General Public License v3.0
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get problem of mexing the c file #12

Open bruce803 opened 8 years ago

bruce803 commented 8 years ago

Hi, It seems that the install didn't work for me. My Matlab version is 2014a and the default compiler (Microsoft Visual C++ 2012 ) is compatible.

But I have been reported:

install Building diagsqmex MEX file. Warning: Legacy MEX infrastructure is provided for compatibility; it will be removed in a future version of MATLAB. For more information, consult the MEX release notes http://www.mathworks.com/help/matlab/release-notes.html. In install at 13 doublevectormex.c ../varbvs-R/src\misc.h(38) : error C2059: syntax error : 'type'

C:\PROGRA~1\MATLAB\R2014A\BIN\MEX.PL: Error: Compile of 'doublevectormex.c' failed.

Unable to complete successfully.

Error in install (line 13) eval(['mex ',opts,' diagsqmex.c doublevectormex.c singlematrixmex.c ',...

pcarbo commented 8 years ago

Can you please add -v to the opts in the install.m script, and re-run it? I need more information to figure out what the problem might be. Thanks.

bruce803 commented 8 years ago

I got this:

install Building diagsqmex MEX file.

-> Default options filename found in C:\Users\bruce\AppData\Roaming\MathWorks\MATLAB\R2014a

-> Options file = C:\Users\bruce\AppData\Roaming\MathWorks\MATLAB\R2014a\mexopts.bat MATLAB = C:\Program Files\MATLAB\R2014a -> COMPILER = cl -> Compiler flags: COMPFLAGS = /c /GR /W3 /EHs /D_CRT_SECURE_NO_DEPRECATE /D_SCL_SECURE_NO_DEPRECATE /D_SECURE_SCL=0 /DMATLAB_MEX_FILE /nologo /MD OPTIMFLAGS = /O2 /Oy- /DNDEBUG DEBUGFLAGS = /Z7 arguments = -DMATLAB_MEX_FILE -I../varbvs-R/src Name switch = /Fo -> Pre-linking commands =
-> LINKER = link -> Link directives: LINKFLAGS = /dll /export:mexFunction /LIBPATH:"C:\Program Files\MATLAB\R2014a\extern\lib\win64\microsoft" libmx.lib libmex.lib libmat.lib /MACHINE:X64 kernel32.lib user32.lib gdi32.lib winspool.lib comdlg32.lib advapi32.lib shell32.lib ole32.lib oleaut32.lib uuid.lib odbc32.lib odbccp32.lib /nologo /manifest /incremental:NO /implib:"C:\Users\bruce\AppData\Local\Temp\mex_hMPmrf\templib.x" /MAP:"diagsqmex.mexw64.map" LINKDEBUGFLAGS = /debug /PDB:"diagsqmex.mexw64.pdb" LINKFLAGSPOST =
Name directive = /out:"diagsqmex.mexw64" File link directive =
Lib. link directive =
Rsp file indicator = @ -> Resource Compiler = rc /fo "mexversion.res"

-> Resource Linker =

--> cl -DMATLAB_MEX_FILE -I../varbvs-R/src /c /GR /W3 /EHs /D_CRT_SECURE_NO_DEPRECATE /D_SCL_SECURE_NO_DEPRECATE /D_SECURE_SCL=0 /DMATLAB_MEX_FILE /nologo /MD /FoC:\Users\bruce\AppData\Local\Temp\mex_hMPmrf\diagsqmex.obj -I"C:\Program Files\MATLAB\R2014a\extern\include" -I"C:\Program Files\MATLAB\R2014a\simulink\include" /O2 /Oy- /DNDEBUG diagsqmex.c

diagsqmex.c

--> cl -DMATLAB_MEX_FILE -I../varbvs-R/src /c /GR /W3 /EHs /D_CRT_SECURE_NO_DEPRECATE /D_SCL_SECURE_NO_DEPRECATE /D_SECURE_SCL=0 /DMATLAB_MEX_FILE /nologo /MD /FoC:\Users\bruce\AppData\Local\Temp\mex_hMPmrf\doublevectormex.obj -I"C:\Program Files\MATLAB\R2014a\extern\include" -I"C:\Program Files\MATLAB\R2014a\simulink\include" /O2 /Oy- /DNDEBUG doublevectormex.c

doublevectormex.c ../varbvs-R/src\misc.h(38) : error C2059: syntax error : 'type'

C:\PROGRA~1\MATLAB\R2014A\BIN\MEX.PL: Error: Compile of 'doublevectormex.c' failed.

Unable to complete successfully.

Error in install (line 13) eval(['mex ',opts,' diagsqmex.c doublevectormex.c singlematrixmex.c ',...

Actually, the mex works after I switched to Ubuntu with Matlab2016a. Does that mean the problem of compiler setup in Windows?

pcarbo commented 8 years ago

I'm glad to hear it works with Ubuntu. :)

I see it is using the "cl" compiler, which I'm not familiar with. In fact, I have little experience with compiling MEX files on Windows. Before trying to solve this problem for the varbvs package, you might first see if you can compile the MEX files in the tutorials given on the MathWorks website.