Closed ghisvail closed 9 years ago
ghisvail
commented
9 years ago I have pushed a branch on my personal fork with an initial transformation to Python 3 via 2to3.
https://github.com/ghisvail/pyoperators/tree/enh/python3-support
The test suite does not run though.
ghisvail
commented
9 years ago FYI, I am trying to convert the whole codebase to Python 3 with 2to3 and then retrospectively introduce support for Python 2.7. Then you'll have a hybrid Python 2 / 3 codebase.
Another option is to have a Python 2 codebase and call 2to3 at install time, but that means you need to be sure that the result of 2to3 is spotless.
Regardless of the solution 2to3 is a good place to start with. Then, since I don't know all the specifics of the package and its test suite, your help would be more than welcome :)
ghisvail
commented
9 years ago More infos here: http://python3porting.com/strategies.html
pchanial
commented
9 years ago Thanks for all the pointers, I've started working on it. From now on, I'll write the codebase for Python 3, with a sprinkle here and there for Python 2 compatibility. Now I need to make the extensions work.
ghisvail
commented
9 years ago If you think you can make a new release compatible with Python 3 in time for the freeze, then I'll wait for it. Otherwise, I am happy to submit the latest 0.12.x for inclusion to the Debian archive.
pchanial
commented
9 years ago I think I've finished the conversion. Let me know if it's ok for you and I'll tag it as 0.12.15.
ghisvail
commented
9 years ago Ok I'll check out the latest commit, build and run the test suite for Python 3. If that passes, then I'll assume it's ready.
ghisvail
commented
9 years ago Hey Pierre,
Good news the project builds nicely. However the test suite is broken.
I fixed the test command which should be using nosetests3 instead in case Python 3 is used. I have submitted a PR for it, but some other commands may need a similar workaround too.
Then the test suite fails a bunch of tests. Here is a dump of my log:
Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest self.test(self.arg) File "/home/gv10/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python3/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'DenseOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest self.test(self.arg) File "/home/gv10/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python3/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'HomothetyOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest self.test(self.arg) File "/home/gv10/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python3/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'SquareOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest self.test(self.arg) File "/home/gv10/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python3/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'Variable' object has no attribute 'ndim'
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/case.py", line 198, in runTest
self.test(_self.arg)
File "/home/gv10/Workspace/pyoperators/test/test_core.py", line 355, in func
assert_raises(TypeError, eval, 'x * y', {'x': x, 'y': y})
File "/home/gv10/Workspace/pyoperators/pyoperators/utils/testing.py", line 225, in assert_raises
np.testing.assert_raises(_args, kwargs)
File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 1020, in assert_raises
return nose.tools.assert_raises(*args,*kwargs)
File "/usr/lib/python3.4/unittest/case.py", line 704, in assertRaises
return context.handle('assertRaises', callableObj, args, kwargs)
File "/usr/lib/python3.4/unittest/case.py", line 162, in handle
callable_obj(_args, _kwargs)
File "
pchanial
commented
9 years ago which scipy version are you using? I'm running scipy 0.13.3 with python3 and I don't have these errors.
ghisvail
commented
9 years ago I am on 0.14.0, which is the latest version packaged on Debian Jessie / unstable.
ghisvail
commented
9 years ago I did not paste all the errors, but it seems they are all related to scipy indeed
ghisvail
commented
9 years ago Here is the full dump:
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'DenseOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'HomothetyOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'SquareOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'Variable' object has no attribute 'ndim'
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(_self.arg)
File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 355, in func
assert_raises(TypeError, eval, 'x * y', {'x': x, 'y': y})
File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/utils/testing.py", line 225, in assert_raises
np.testing.assert_raises(_args, kwargs)
File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 1020, in assert_raises
return nose.tools.assert_raises(*args,*kwargs)
File "/usr/lib/python2.7/unittest/case.py", line 473, in assertRaises
callableObj(_args, _kwargs)
File "
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assert_same(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assert_same(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assert_same(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assert_same(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assert_same(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assert_same(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assert_same(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assert_same(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assert_same(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assert_same(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools'
ghisvail
commented
9 years ago And I can do a from scipy.sparse import sparsetools or a import scipy.sparse.sparsetools without an AttributeError on a separate Python interpreter.
pchanial
commented
9 years ago OK, I can reproduce the errors using scipy 0.14...
2014-10-09 21:49 GMT+02:00 ghisvail notifications@github.com:
Here is the full dump: ERROR: test.test_core.test_times_mul_or_comp('
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testcore.py", line 359, in func z = x * y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in *mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'DenseOperator' object has no attribute 'ndim' ERROR: test.test_core.test_times_mul_or_comp('
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testcore.py", line 359, in func z = x * y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in *mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'HomothetyOperator' object has no attribute 'ndim' ERROR: test.test_core.test_times_mul_or_comp('
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testcore.py", line 359, in func z = x * y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in *mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'SquareOperator' object has no attribute 'ndim' ERROR: test.test_core.test_times_mul_or_comp('
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testcore.py", line 359, in func z = x * y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in *mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'Variable' object has no attribute 'ndim' ERROR: test.test_core.test_times_mul_or_comp('
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 355, in func assert_raises(TypeError, eval, 'x * y', {'x': x, 'y': y}) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/utils/testing.py", line 225, in assert_raises np.testing.assert_raises(_args, *kwargs) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 1020, in assert_raises return nose.tools.assert_raises(args,*kwargs) File "/usr/lib/python2.7/unittest/case.py", line 473, in assertRaises callableObj(_args, _kwargs) File "", line 1, in File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'VariableTranspose' object has no attribute 'ndim' ERROR: test.test_sparse.test_matvec('bsr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assertsame(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_matvec('csr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assertsame(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_matvec('csc',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assertsame(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_matvec('coo',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assertsame(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_matvec('dia',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 26, in func assertsame(so(vec), np.dot(A, vec)) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_shapes('bsr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assertsame(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_shapes('csr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assertsame(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_shapes('csc',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assertsame(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_shapes('coo',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assertsame(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_shapes('dia',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_sparse.py", line 41, in func assertsame(so(np.reshape(vec, shapein)), File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_update_output('bsr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testsparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_update_output('csr',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testsparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_update_output('csc',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testsparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_update_output('coo',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testsparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec') AttributeError: 'module' object has no attribute 'sparsetools' ERROR: test.test_sparse.test_update_output('dia',)
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(_self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/testsparse.py", line 56, in func so(vec, out, operation=operator.iadd) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/core.py", line 361, in *call self.direct(i, o, operation=operation) File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/linear.py", line 426, in direct fn = getattr(sp.sparsetools, m.format + '_matvec')
AttributeError: 'module' object has no attribute 'sparsetools'
— Reply to this email directly or view it on GitHub https://github.com/pchanial/pyoperators/issues/13#issuecomment-58566720.
pchanial
commented
9 years ago So this one is an easy fix, thanks!
2014-10-09 21:51 GMT+02:00 ghisvail notifications@github.com:
And I can do a from scipy.sparse import sparsetools or a import scipy.sparse.sparsetools without an AttributeError on a separate Python interpreter.
— Reply to this email directly or view it on GitHub https://github.com/pchanial/pyoperators/issues/13#issuecomment-58566969.
ghisvail
commented
9 years ago Yes I manage to get around these errors by explictly importing
import scipy.sparse.sparsetools as ssp
and replacing all occurences of sp.sparsetools by ssp in pyoperators/linear.py
The missing ndim attribute error remains though.
ghisvail
commented
9 years ago This is the dump of the last 5 errors:
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'DenseOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'HomothetyOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'SquareOperator' object has no attribute 'ndim'
Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(self.arg) File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 359, in func z = x \ y File "/usr/lib/python2.7/dist-packages/scipy/sparse/base.py", line 324, in mul if other.ndim == 1 or other.ndim == 2 and other.shape[1] == 1: AttributeError: 'Variable' object has no attribute 'ndim'
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(_self.arg)
File "/home/ghislain-deb/Workspace/pyoperators/test/test_core.py", line 355, in func
assert_raises(TypeError, eval, 'x * y', {'x': x, 'y': y})
File "/home/ghislain-deb/Workspace/pyoperators/pyoperators/utils/testing.py", line 225, in assert_raises
np.testing.assert_raises(_args, kwargs)
File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 1020, in assert_raises
return nose.tools.assert_raises(*args,*kwargs)
File "/usr/lib/python2.7/unittest/case.py", line 473, in assertRaises
callableObj(_args, _kwargs)
File "
Ran 6399 tests in 22.025s
FAILED (SKIP=14, errors=5)
pchanial
commented
9 years ago So, I've fixed the test failures. For the ndim one, I was explicitly expecting 0.14 to fix a bug that they didn't quite fix. I should submit a more robust patch.
ghisvail
commented
9 years ago I confirm this, both Python 2 and 3 pass the test suite now. Good job Pierre.
pchanial
commented
9 years ago Thanks a lot for your help! Does the -mnose fix work for you, should I upload it?
ghisvail
commented
9 years ago -mnose fails as I mentioned in the PR thread.
It's not a terrible problem though, as long as the test suite can be run on one of the Python versions.
pchanial
commented
9 years ago I just tried the sys.executable -mnose fix and it works for me in both python 2 & 3. Are you sure that you built the extensions inplace (python3 setup.py build_ext --inplace)? I guess we should use the installed pyoperators package instead of the local one for test. Not sure what to do here.
ghisvail
commented
9 years ago I did yes:
python3 setup.py build_ext --inplace
followed by:
python3 setup.py test
and that generates a bunch of ImportError and NameError. No problem with Python 2 though. Could well be a bug in nose too.
If it definitely works on your Arch box, then you should probably release this version. I'll make sure the test suite is not run for Python 3 for now.
pchanial
commented
9 years ago Work is done, closing.
Following what we discussed in #12, I think Python 3 support could be a great addition and should not be too difficult to achieve. I propose we log our progress here.