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pcingola / Epistasis

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MI using multiple AAs #2

Closed pcingola closed 10 years ago

pcingola commented 10 years ago

i) For AA "in contact" using one base on each side ii) Calculate background distribution

pcingola commented 10 years ago

Questions: i) How many fully conserved bases are in the whole MSA? ii) How many fully conserved regions of 3, 5, ...N bases are in the MSA? (region size=1 is question i)