Closed Suuusj closed 3 years ago
There are plenty of examples and guidance in the documentation: https://pcingola.github.io/SnpEff/ss_introduction/
Also there is a specific "examples" section in SnpEff's website: https://pcingola.github.io/SnpEff/examples/
Hi all,
I am kinda new to this field, so my apologies in advance.
I am trying to run SnpEff on my Mac using Anaconda. I think I managed to install the package (conda install -c bioconda snpeff), now I try to run the tool which is where I am stuck.
What would be the command line code that should be used to run the tool, and which input does it require? Only a VCF file?
I expect it to be something like; snpeff - input.vcf -output.vcf ?
Thanks in advance for helping out
Suzanne