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pcingola / SnpEff

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ERROR while connecting to server #280

Closed chc36 closed 3 years ago

chc36 commented 3 years ago

Hi,

I recently installed the snpEff v5.0.0, and when I tried to download the Arabidopsis thaliana database using

$java -jar snpEff.jar download -v Arabidopsis_thaliana

the error message showed up:

00:00:00    SnpEff version SnpEff 5.0 (build 2020-08-09 21:23), by Pablo Cingolani
00:00:00    Command: 'download'
00:00:00    Reading configuration file 'snpEff.config'. Genome: 'Arabidopsis_thaliana'
00:00:00    Reading config file: /Users/chiahuichou/Desktop/snpeff-5.0-0/share/snpeff-5.0-0/snpEff.config
00:00:01    done
00:00:01    Downloading database for 'Arabidopsis_thaliana'
00:00:01    Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_Arabidopsis_thaliana.zip
00:00:02    ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_Arabidopsis_thaliana.zip
java.lang.RuntimeException: java.lang.RuntimeException: File not found on the server. Make sure the database name is correct.
    at org.snpeff.util.Download.download(Download.java:178)
    at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.downloadAndInstall(SnpEffCmdDownload.java:32)
    at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.runDownloadGenome(SnpEffCmdDownload.java:86)
    at org.snpeff.snpEffect.commandLine.SnpEffCmdDownload.run(SnpEffCmdDownload.java:72)
    at org.snpeff.SnpEff.run(SnpEff.java:1194)
    at org.snpeff.SnpEff.main(SnpEff.java:167)
Caused by: java.lang.RuntimeException: File not found on the server. Make sure the database name is correct.
    at org.snpeff.util.Download.download(Download.java:127)
    ... 5 more
00:00:02    Logging
00:00:03    Done.

Thanks!

pcingola commented 3 years ago

This should have been solved by now. I'm closing the issue, please reopen if you see this error again.