Genome file MN908947.3 missing

rdeborja commented 3 years ago

After upgrading to snpEff version 5.0-1 within conda, the URL for the MN908947.3 genome fails to download:

00:00:00    ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_MN908947.3.zip

Can someone check if the file is corrupt or if the link is incorrect?

dfornika commented 3 years ago

I'm seeing the same error, also with snpEff-5.0-0 from bioconda.

pcingola commented 3 years ago

Fixed, thank you for the heads-up

$ java -jar snpEff.jar download -v MN908947.3
00:00:00 SnpEff version SnpEff 5.0f (build 2021-03-29 22:28), by Pablo Cingolani
00:00:00 Command: 'download'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'MN908947.3'
00:00:00 Reading config file: /Users/kqrw311/workspace/SnpEff/config/snpEff.config
00:00:00 done
00:00:00 Downloading database for 'MN908947.3'
00:00:00 Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_MN908947.3.zip
...
00:00:01 Download finished. Total 11139 bytes.
00:00:01 Extracting file 'data/MN908947.3/snpEffectPredictor.bin'
00:00:01 Unzip: OK
...
00:00:02 Done.

pcingola / SnpEff

Genome file MN908947.3 missing #308