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Can't download the databases of python bivittatus while using snpEff download #498

Open Jioaqing opened 12 months ago

Jioaqing commented 12 months ago

Describe the issue Can't download the databases of python bivittatus while using snpEff download, however I can download other speices' databases using same method.

To Reproduce

  1. SnpEff version: 5.2
  2. Genome version: bivittatus
  3. SnpEff full command line: java -jar snpEff.jar download -v bivittatus
  4. Output / Error message: Please include detailed infomration, such as transcript ID, VCF line output, etc. $java -jar snpEff.jar download -v bivittatus 00:00:00 SnpEff version SnpEff 5.2 (build 2023-09-29 06:17), by Pablo Cingolani 00:00:00 Command: 'download' 00:00:00 Reading configuration file 'snpEff.config'. Genome: 'bivittatus' 00:00:00 Reading config file: /home/roo/data/snp/snpeff/snpEff/snpEff.config 00:00:01 done 00:00:01 Downloading database for 'bivittatus' 00:00:01 Downloading from 'https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_bivittatus.zip' to local file '/tmp/snpEff_v5_2_bivittatus.zip' 00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_bivittatus.zip 00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_bivittatus.zip, using proxy: false 00:00:10 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_bivittatus.zip 00:00:10 Downloading from 'https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_bivittatus.zip' to local file '/tmp/snpEff_v5_0_bivittatus.zip' 00:00:10 Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_bivittatus.zip 00:00:10 Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_bivittatus.zip, using proxy: false 00:00:11 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_bivittatus.zip 00:00:11 Downloading from 'https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_bivittatus.zip' to local file '/tmp/snpEff_v5_1_bivittatus.zip' 00:00:11 Connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_bivittatus.zip 00:00:11 Connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_bivittatus.zip, using proxy: false 00:00:12 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_bivittatus.zip FATAL ERROR: Failed to download database from [https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_bivittatus.zip, https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_bivittatus.zip, https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_bivittatus.zip]

Expected behavior A clear and concise description of what you expected to happen (show program's output for comparisson)

Data Sample data. No need to add the full genomic dataset, but a few input lines enough to reproduce the conditions. WARNING: Always attach the data files such as VCF lines.

Additional context

etrh commented 11 months ago

https://github.com/pcingola/SnpEff/issues/503