pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
https://pdimens.github.io/harpy
GNU General Public License v3.0
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[SV] sample grouping not using phased bams #120

Closed pdimens closed 3 months ago

pdimens commented 3 months ago

Describe the bug

The sample grouping for the naibr phasing workflow doesn't use the phased bam files, instead it uses the original, which is bad.

Harpy Version

1.4

File that triggers the error (if applicable)

No response

Harpy error log

No response

Before submitting

pdimens commented 3 months ago

addressed with 1de82eb