pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
https://pdimens.github.io/harpy
GNU General Public License v3.0
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tidy up impute #130

Closed pdimens closed 4 weeks ago

pdimens commented 4 weeks ago

The workflow now correctly (and idiommatically) handles temporary files generated by STITCH, rather than manually (and inconsistently) removing them with complicated and decentralized logic.

The workflow output directory structure is more natural and similar to other workflows.

The collated report no longer has a plot and the text was improved. Added model params to the report.

One more fix/conditional for the progress bar to output text if there was a SM error