pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
https://pdimens.github.io/harpy
GNU General Public License v3.0
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biallelic contig finder has false positives #133

Closed pdimens closed 2 months ago

pdimens commented 2 months ago

Describe the bug

The function that scans a vcf for biallelic contigs returns all contigs regardless of whether they are biallelic or not.

need to add the -H flag to the bcftools view command

Harpy Version

main

File that triggers the error (if applicable)

No response

Harpy error log

No response

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