[simulate linkedreads] consider swapping dwgsim for ngsngs

[pdimens]

Description of feature

NGNGS is multithreaded and may present the option of simulating multiple individuals.

https://github.com/RAHenriksen/NGSNGS

[pdimens]

considerations:

• [ ] the read headers have the location in a different place, which will require manually editing the (perl) code that looks for the position

  
  T<ThreadNumber>_RID<RandomID>_S<Read1StrandInfo>_<Chromosome>:<Start>-<End>
  _length:<Fragmentlength>_<modVal1Val2Val3Val4> F<FragmentNumber> R<PairNumber>

e.g. @T0_RID49_S0_NZ_CP029543.1:2236795-2236942_length:148_mod1000 F0 R1

- [ ] create a routine to pick a number of individuals
- [ ] options for including trueseq adapters and poly G tails

[pdimens]

This seems like a lot of work for minimal gain. Might revisit this some day.