replace minimap with strobealign

pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

https://pdimens.github.io/harpy

GNU General Public License v3.0

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Closed pdimens closed 4 months ago

pdimens commented 4 months ago

strobealign is much faster than BWA and minimap2 (which is itself faster than bwa) and as (or more) accurate, so