[QC] --skip-adapters should be opt-in as --trim-adapters

pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

https://pdimens.github.io/harpy

GNU General Public License v3.0

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Closed pdimens closed 2 months ago

pdimens commented 2 months ago

reverse the order so there is more consistent control of this workflow