search

pditommaso / awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
6.1k stars 625 forks source link

Add Anvi’o metagenomics community and framework. #189

Closed MatthiasZepper closed 9 months ago

MatthiasZepper commented 9 months ago

This PR adds Anvi’o, a metagenomics community and framework. The original Anvi’o publication is from 2015, an update was published in 2021:

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO: Anvi’o: an advanced analysis and visualization platform for ‘omics data. PeerJ 3:e1319 (2015) https://doi.org/10.7717/peerj.1319

Eren, A.M., Kiefl, E., Shaiber, A. et al. Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6, 3–6 (2021). https://doi.org/10.1038/s41564-020-00834-3

Exemplary third-party studies which reference Anvi’o are:

Taş N, de Jong A., Li Y., Trubl G., Xue Y., Dove NC.: Metagenomic tools in microbial ecology research. Current Opinion in Biotechnology 67, 184-191 (2021) https://doi.org/10.1016/j.copbio.2021.01.019

Gaïa, M., Meng, L., Pelletier, E. et al. Mirusviruses link herpesviruses to giant viruses. Nature 616, 783–789 (2023). https://doi.org/10.1038/s41586-023-05962-4