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pdxgx
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neoepiscope
predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
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Support substitutions longer than 1
#18
ThijsMaas
opened
3 years ago
0
Updated unit tests and transcript class for germline/somatic/rna overlapping options
#17
ericjiyun03
closed
3 years ago
0
Eric's latest code updates for RNA editing
#16
ericjiyun03
closed
3 years ago
1
Error when running Neoepiscope
#15
leldershaw
closed
3 years ago
2
Possible to upgrade to latest numpy?
#14
jwhite007
closed
4 years ago
3
"-g" in prep? exists in README.md, but not usage message
#13
jfass
closed
4 years ago
2
running for a long time; output stopped in the middle of a warning
#12
jfass
opened
4 years ago
12
incomplete warning message
#11
jfass
closed
4 years ago
1
Fix loading of info transcripts for custom reference builds
#10
ThijsMaas
closed
4 years ago
0
transcript_to_gene_info.pickle is not loaded
#9
ThijsMaas
closed
4 years ago
1
Fixed uninitialized call of variable field if VAF is None
#8
jafors
closed
4 years ago
1
fail to include germline variant information
#7
alex84425
opened
4 years ago
13
Prioritizing neoepitopes
#6
tarini92
opened
5 years ago
2
No neoepitopes found.
#5
tarini92
closed
5 years ago
7
Integrating HapCUT2
#4
tarini92
closed
5 years ago
2
Transcript.py expressed edit function has list index problems during edits out of interval ranges
#3
Boeinco
closed
5 years ago
1
Python 2 and 3 order transcripts in output differently
#2
nellore
opened
5 years ago
1
merges changes in the clean_transcript branch
#1
maryawood
closed
6 years ago
0