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pedronachtigall / CodAn

CDS prediction in transcripts
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problem with conda installation #9

Closed cooketho closed 3 years ago

cooketho commented 3 years ago

I could not get a working installation with the command recommended in the documentation:

conda create -n codan_env python=3.7 biopython perl perl-bioperl perl-mce blast

For some reason bioperl was not installing correctly, resulting in codan.py giving an error message about a missing index file. I followed the solution here: https://github.com/bioconda/bioconda-recipes/issues/20459, which fixed the problem. The installation command that worked was:

conda create -c bioconda -n codan_env python biopython perl perl-mce blast "perl-bioperl>=1.7.2"