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pedronachtigall / ToxCodAn

Toxin genes annotation in venom gland transcriptome assembly
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I am encountering an issue while trying to use ToxCodAn. After installation, I receive error messages indicating that the codan.py file is not found. #8

Open lucasgrezzi opened 6 days ago

lucasgrezzi commented 6 days ago

Steps to reproduce the issue:

I installed ToxCodAn according to the instructions in the README.

I executed the command: python3 /home/lucas/ToxCodAn/bin/toxcodan.py -t /home/lucas/ToxCodAn/bin/Mfulv.fasta -m /home/lucas/ToxCodAn/bin/models

I received the following error messages

sh: 1: codan.py: not found

Additional Information:

I checked the permissions, and toxcodan.py has execution permissions. The paths to the files are correct, and all necessary files are in the same directory. I tried reinstalling ToxCodAn, but the issue persists.

Problem

lucasgrezzi commented 6 days ago

I've uninstalled and installed ToxCodAn twice, but I can't find any file named codan.py. The filter also brings up this same problem.

pedronachtigall commented 1 day ago

Hi @lucasgrezzi

You are not finding codan.py because it is another tool: https://github.com/pedronachtigall/CodAn

You need to ensure that all requirements are working properly. Take a deep look into all requirements. You may also need to apply executaion permission into all files in bin: chmod +x path/to/ToxCodAn/bin/*

Hope that it helps.

Best, Pedro